| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,435,516 – 6,435,632 |
| Length | 116 |
| Max. P | 0.939966 |
| Location | 6,435,516 – 6,435,632 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.43 |
| Mean single sequence MFE | -39.83 |
| Consensus MFE | -25.61 |
| Energy contribution | -25.53 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.939966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6435516 116 + 22224390 GGUUUUCUAUCAAGUUCA-CAAUCUUGAUCACAGGUGCUGCAGUGCAUGGAUAAUAUGAAUCAAGGCAGCACCGAUCAGUUAACCGUCCAGGAGGUGUUUGUCGCCUCUUGUGCCCU ((((..((((((((....-....))))))....((((((((..((((((.....))))...))..))))))))....))..))))(..(((((((((.....)))))))))..)... ( -44.60) >DroVir_CAF1 67511 114 + 1 UGCUUAU-UUGC-GCUUC-UUUACUUGUGUACAGGUCCUGCAUUGCAUGGAUAAUCUAAAUCAGGGCAGCACCGAACAGCUAACGGUACAGGAGGUAUUCGUCGCCUCCUGUGCUCU .(((...-.(((-((...-.......)))))..(((.((((.(((..(((.....)))...))).)))).)))....)))....((((((((((((.......)))))))))))).. ( -37.10) >DroWil_CAF1 53056 114 + 1 UGCUUAU-CUGC-GAUUC-UUUAAUUGUGUACAGGUGCUGCUGUGCAUGGAUAAUCUGAACCAGGGCUGCACUGAGCAGCUAACUGUCCAGGAGGUAUUUGUGGCAUCGUGCGCUUU .((....-..))-.....-.......((((((.(((((..(.((((.((((((..(((...)))((((((.....))))))...))))))....))))..)..)))))))))))... ( -40.50) >DroMoj_CAF1 69841 114 + 1 GGCUUAC-CUGC-GAUUC-UUUACUUGUGUACAGGUGCUACAUUGCAUGGAUAAUUUGAAUCAGGGCAGCACCGAGCAGUUAACGGUACAGGAGGUGUUUGUCGCAUCCUGUGCACU .((((.(-((((-(((..-..((((((....))))))....)))))).)).............((......))))))........((((((((.(((.....))).))))))))... ( -35.70) >DroAna_CAF1 66320 114 + 1 GGCUUAC-CUGAGAUUCAUCCA-C-UGUCCACAGGUGCUGCAGUGUAUGGAUAAUCUGAACCAGGGCAGCACCGAGCAACUAACCGUCCAGGAGGUGUUCGUCGCCUCCUGUGCCCU ((.(((.-.....((((((.((-(-(((.((....))..)))))).))))))....))).))((((((((.....))...........(((((((((.....))))))))))))))) ( -41.50) >DroPer_CAF1 61819 114 + 1 UGCUUAU-CUGC-GCUUA-UUUUCUUGUGUACAGGUGCUGCAGUGCAUGGAGACCUUGAACCAGGGCAGCGCCGAACAGCUCACCGUCCAGGAGGUAUUCAUCGCCUCCUGUGCCCU .(((..(-((((-((...-.......)))))..((((((((.((.((.(....)..)).))....))))))))))..))).....(..((((((((.......))))))))..)... ( -39.60) >consensus GGCUUAC_CUGC_GAUUA_UUUACUUGUGUACAGGUGCUGCAGUGCAUGGAUAAUCUGAACCAGGGCAGCACCGAGCAGCUAACCGUCCAGGAGGUAUUCGUCGCCUCCUGUGCCCU .........................(((.....((((((((......(((..........)))..))))))))..))).......((.((((((((.......)))))))).))... (-25.61 = -25.53 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:39 2006