| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,434,294 – 6,434,394 |
| Length | 100 |
| Max. P | 0.578170 |
| Location | 6,434,294 – 6,434,394 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 85.07 |
| Mean single sequence MFE | -13.96 |
| Consensus MFE | -10.62 |
| Energy contribution | -11.10 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6434294 100 + 22224390 AAUACACAUA----UAUUCUAUGUACGUACGUGUAACGAGAACGAAACAUUUACU----AACCGAUGCCAAAAUAAAAUGGCCGCAAAGAAAUAAAAAA--AAAACAAAC ..........----..((((.(((..(((.((((..((....))..)))).))).----.......((((........)))).))).))))........--......... ( -13.90) >DroSec_CAF1 51211 93 + 1 AAUACACAUA----UAUUCUAUGUACGUACGUGUAACGAGAACGAAACAUUUACU----AACCGAUGCCA--AUGAAAUGGCCGCAAAGAAAUAAUAAA--AAAA----- ..........----..((((.(((..(((.((((..((....))..)))).))).----.......((((--......)))).))).))))........--....----- ( -14.10) >DroSim_CAF1 50815 93 + 1 AAUACACAUA----UAUUCUAUGUACGUACGUGUAACGAGAACGAAACAUUUACU----AACCGAUGCCA--AUGAAAUGGCCGCAAAGAAAUAAAAAA--AAAA----- ..........----..((((.(((..(((.((((..((....))..)))).))).----.......((((--......)))).))).))))........--....----- ( -14.10) >DroEre_CAF1 51415 99 + 1 AAUACACAUA----UAUUCUAUGUACGUACGUGUAACGAGAUCGAAACAUUUACUAACUAACCGAAGGCG--AUGAAAUGGCCGCAAAGAAAUACAAAAAAAAAU----- ..........----..((((.(((..(((.((((..((....))..)))).)))............(((.--((...)).)))))).))))..............----- ( -15.10) >DroAna_CAF1 64207 97 + 1 AAUAAACAUAUAUAUAUUUUAUGUACGUAUGUGUAACGAGAACGAAACAUUUACU----AACCGAUGCCA--CUCGAAAGGCCGCAAACAAAAUCAUAA--AACA----- ................(((((((...(((.((((..((....))..)))).))).----......(((..--.((....))..)))........)))))--))..----- ( -12.60) >consensus AAUACACAUA____UAUUCUAUGUACGUACGUGUAACGAGAACGAAACAUUUACU____AACCGAUGCCA__AUGAAAUGGCCGCAAAGAAAUAAAAAA__AAAA_____ ................((((.(((..(((.((((..((....))..)))).)))............((((........)))).))).))))................... (-10.62 = -11.10 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:38 2006