| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 826,963 – 827,070 |
| Length | 107 |
| Max. P | 0.992869 |
| Location | 826,963 – 827,070 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 66.55 |
| Mean single sequence MFE | -33.11 |
| Consensus MFE | -14.03 |
| Energy contribution | -14.91 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.42 |
| SVM decision value | 2.36 |
| SVM RNA-class probability | 0.992869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 826963 107 - 22224390 AAGUGGGAUUAACGCUCUUAGGUAUUUAAAUAUUUACUUAG-UUGCCUGAGUUUGCGUUUCGAAAUAAAA-GGAACGAUC-----------CCAUUCACUGCCCGCAAAUUGUGGCUCCA .(((((((((...((.((((((((.((((........))))-.))))))))...))(((((.........-)))))))))-----------)))))....(((.((.....))))).... ( -32.60) >DroSec_CAF1 28288 108 - 1 AAGUGGGAUUAACGCUCUUAGGUAUUUAAGUAAGCACUCAU-UUGCCUGAGUUUGCGUUUCGAAAUGAAGGGGAACGAUC-----------CCUUUCACUGCCCGCAACUUGUGGCUCCA ..(((((...(((((.((((((((..(.(((....))).).-.))))))))...)))))......(((((((((....))-----------)))))))...))))).............. ( -38.60) >DroSim_CAF1 24685 107 - 1 AAGUGGGAUUAACGCUCUUAGGUAUUUAAAUAAGCACUCAU-UUGCCUGAGUUUGCGUUUCGAAAUGAAG-GGAACGAUC-----------CCUUUCACUGCCCGCAACUUGUGGCUCCA ..(((((...(((((.((((((((.................-.))))))))...))))).......((((-(((....))-----------))))).....))))).............. ( -31.57) >DroEre_CAF1 28225 100 - 1 AAGUGGGAUCUGCGCCUUUGGUUCAGGAGAGGAA--------CUU-UCACGUUUGUGA----------AA-GGAACGAUCUGUAACCAGGACAUUGCACUGCCCGCCACUUGUGGCUCCA ....(((...((((..(((((((((((...(...--------(((-((((....))))----------))-)...)..)))).)))))))....))))...)))((((....)))).... ( -33.70) >DroYak_CAF1 25065 104 - 1 AAGUCGGUUUUACACUUUCAGUUAUUUAAAUACGCACACAGGCUGCCUGCCUUUGUGU---------------UCCGAUCUUUAACAAGGGUAUUCCACUGC-CGCAACUUGUGGCUCCA .(((.((...(((.((((..((((.........(((((.((((.....)))).)))))---------------.........)))))))))))..)))))((-(((.....))))).... ( -29.07) >consensus AAGUGGGAUUAACGCUCUUAGGUAUUUAAAUAAGCACUCAG_UUGCCUGAGUUUGCGUUUCGAAAU_AAA_GGAACGAUC___________CCUUUCACUGCCCGCAACUUGUGGCUCCA .....(((..(((((.((((((((...................))))))))...))))).........................................((.(((.....)))))))). (-14.03 = -14.91 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:44 2006