Locus 24

Sequence ID X_DroMel_CAF1
Location 71,672 – 71,772
Length 100
Max. P 0.650167
window28

overview

Window 8

Location 71,672 – 71,772
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -27.63
Consensus MFE -20.95
Energy contribution -21.07
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.78
Structure conservation index 0.76
SVM decision value 0.24
SVM RNA-class probability 0.650167
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 71672 100 + 22224390
CCUAUAGUUGAGUUACUCAGCUAGUGGGUGUGCAAGGGAUAAAUUGCAAUAUUAUUUUGAAGAAUAAUAAAAUAAAAUUGCAGCCUAUGCGCGUUAGAGU
((((((((((((...))))))).))))).(((((.(((.....(((((((.((((((((........)))))))).)))))))))).)))))........ ( -31.70)
>DroSec_CAF1 48318 100 + 1
CCUAUAGUUGAGAUACUCAGCUAGUGGGUGAGCAAGGGAGUAAUUUCAAUAUUAUUUUGAAGAAUAAUAUAAUAAACUUGCGGCCUGUGCGCGUUAGAGU
.(((((((((((...))))))))(..(((..(((((.(((....))).(((((((((....)))))))))......))))).)))..)......)))... ( -26.70)
>DroSim_CAF1 49246 100 + 1
CCUAUAGUUGAGAUACUUAGCUAGUGGGUGAGCAAGGGAGUAAUUUCAAUAUUAUUUUGAAGAAUAAUAUAAUAAACUUGCGGCCUGUGCGCGUUAGAGU
.(((((((((((...))))))))(..(((..(((((.(((....))).(((((((((....)))))))))......))))).)))..)......)))... ( -24.50)
>consensus
CCUAUAGUUGAGAUACUCAGCUAGUGGGUGAGCAAGGGAGUAAUUUCAAUAUUAUUUUGAAGAAUAAUAUAAUAAACUUGCGGCCUGUGCGCGUUAGAGU
((((((((((((...))))))).)))))...(((.(((..........(((((((((....))))))))).............))).))).......... (-20.95 = -21.07 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:36 2006