Locus 2398

Sequence ID	X_DroMel_CAF1
Location	6,424,897 – 6,425,011
Length	114
Max. P	0.771408

overview

Window 3

Location	6,424,897 – 6,425,011
Length	114
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	95.91
Mean single sequence MFE	-41.10
Consensus MFE	-37.22
Energy contribution	-36.72
Covariance contribution	-0.50
Combinations/Pair	1.03
Mean z-score	-1.79
Structure conservation index	0.91
SVM decision value	0.53
SVM RNA-class probability	0.771408
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6424897 114 + 22224390
AAGCCACCACCAGUGCCUGGUCAUGUGCCGGGAUGGGCCAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGUGAGCAGAUGCAACGAGAGCAGUAU
..(((((..(((...((((((.....)))))).))).....((....)).(((((((.....((....)).((....))..)))))))))).))..((((..(....)..)))) ( -38.20)
>DroSec_CAF1 41885 114 + 1
AAGCCACCACCAGUGCCUGGUCAUGUGCCGGGUUGGGCAAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGUGAGCAGAUGCAACGUGAGCAGUAU
..(((((..(((..(((((((.....))))))))))(((..(((...((((.(((.......))).)))).((....))...))).((....))...)))...))).))..... ( -41.30)
>DroEre_CAF1 41823 114 + 1
AAGCCGCCACCAGUGCCUGGUCAUGUGCCGGGAUGGGCCAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGCGAGCAGAUGCAACGAGAGCAGUAC
..(((((..(((...((((((.....)))))).))).....((....)).(((((((.....((....)).((....))..)))))))))).))...(((.......))).... ( -39.40)
>DroYak_CAF1 44619 114 + 1
AAGCCGCCACCAGUGCCUGGACAUGUGCCGGGGUGGGCCAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGCGAGCAGAUGCAGCGAGAGCAGUAU
...(((((.((.(..(........)..).)))))))(((..((....)).((((((((....(((.((((.......)))).))).((....)).))))))))..).))..... ( -45.50)
>consensus
AAGCCACCACCAGUGCCUGGUCAUGUGCCGGGAUGGGCCAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGCGAGCAGAUGCAACGAGAGCAGUAU
..(((((..(((...(((((.......))))).))).....((....)).(((((((.....((....)).((....))..)))))))))).))...(((.......))).... (-37.22 = -36.72 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:34 2006