| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,401,144 – 6,401,238 |
| Length | 94 |
| Max. P | 0.548311 |
| Location | 6,401,144 – 6,401,238 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 90.53 |
| Mean single sequence MFE | -44.12 |
| Consensus MFE | -35.19 |
| Energy contribution | -36.25 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6401144 94 - 22224390 CU------GGGAGACGCGACGACCCUCAAAAGUGGUUUCCCGCUGCACCUGACGUGGCUCCACACUGGGCGACUUGGAGCUACGCCUCAGCUGUGGCUCC-- ..------(((((((.(.((...........))))))))))((..((.((((((((((((((....((....))))))))))))..)))).))..))...-- ( -40.80) >DroSec_CAF1 26556 100 - 1 CUCCGGAUGGGAGACGCGACGACCCUCAAAUGUAGUUUCCCGCUGCACCUGACGUGUCUCCACACUGGGCGACUUGGAGCUACGCCUCAGCUGUGGCUCC-- .(((((.(((((((((((.......(((..((((((.....))))))..)))))))))))).)))))))......((((((((((....)).))))))))-- ( -42.71) >DroSim_CAF1 24624 100 - 1 CUCCGGAUGGGAGACGCGACGACCCUCAAAAGUAGUUUCCCGCUGCACCUGACGUGGCUCCACACUGGGCGACUUGGAGCUACGCCUCAGCUGUGGCUCC-- ....(((.(((((((...((...........)).)))))))((..((.((((((((((((((....((....))))))))))))..)))).))..)))))-- ( -43.40) >DroEre_CAF1 26688 100 - 1 CUCCGGAUGGGAGACGCGACGACCCUCGAAAGUCGUUUCCCGCUGCACCUGACGUGGCUCCACACUGGGCGACUUGGAGCUACGCCUCAGCUGUGGCUCC-- ....(((.(((((((((..((.....))...).))))))))((..((.((((((((((((((....((....))))))))))))..)))).))..)))))-- ( -46.50) >DroYak_CAF1 29904 102 - 1 CUCCGGAUGGGAGACGCGACGACCUUCGAAAGUAGUUUCCCGCUGCACCUGACGUGGCUCCACACUGGGCGACUUGGAGCUACGCCUCAGCUGUGGCUCCGU ...((((.(((((((((..((.....))...)).)))))))((..((.((((((((((((((....((....))))))))))))..)))).))..)))))). ( -47.60) >DroAna_CAF1 36808 100 - 1 CUCCGGCUGGGAGACGCGGCGUCCCUCGAACGUCGUUUCCCGCUGCACCGUCCGUCGCUCCACGCUGGGCGACUUGGAGCUCCGCCUCGGCUGGAACUCC-- .(((((((((((((((((.((.....))..)).))))))))((.((.(((...(((((((......))))))).))).))...))...))))))).....-- ( -43.70) >consensus CUCCGGAUGGGAGACGCGACGACCCUCAAAAGUAGUUUCCCGCUGCACCUGACGUGGCUCCACACUGGGCGACUUGGAGCUACGCCUCAGCUGUGGCUCC__ ........(((((((...((...........)).)))))))((((((.((((((((((((((....((....))))))))))))..)))).))))))..... (-35.19 = -36.25 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:25 2006