Locus 2392

Sequence ID X_DroMel_CAF1
Location 6,393,134 – 6,393,235
Length 101
Max. P 0.599166
window3892

overview

Window 2

Location 6,393,134 – 6,393,235
Length 101
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.62
Mean single sequence MFE -26.22
Consensus MFE -16.45
Energy contribution -18.40
Covariance contribution 1.95
Combinations/Pair 1.16
Mean z-score -1.61
Structure conservation index 0.63
SVM decision value 0.13
SVM RNA-class probability 0.599166
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6393134 101 - 22224390
-AGUCAUUAGUGCAGGUGGAGUUUUUUUG------------UUUCGCUGGCC--GGAAAGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUGGCUCAAUUUGAAGCCAAGCUUGAGA
-......((((((((((((...((((..(------------((.....))).--.)))).))))))))))))...(((((......(((((((((.....).)))).))))))))) ( -30.20)
>DroSec_CAF1 18704 99 - 1
-AGUCAUUAGUGCA-GUGGAGUUU-UUUG------------UUUCGCUGGCCCGGGAAGGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUGGCUUAA--UGAAGCCAAGCUUGCGA
-......(((((((-((((((...-....------------))))))(((((......)))))..)))))))................(((((((..--..)))))))........ ( -28.40)
>DroSim_CAF1 19944 100 - 1
-AGUCAUUAGUGCAGGUGGAGUUU-UUUG------------UUUCGCUGGCC--GGAAAGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUGGCUUAAUUUGAAGCCAAGCUUGCGA
-......((((((((((((..(((-(..(------------((.....))).--.)))).))))))))))))................(((((((......)))))))........ ( -28.90)
>DroEre_CAF1 18617 89 - 1
GAGUCAUUAGUGCAGGUGGAGUUU-UUUG------------UUUCGCUGGCC--GGAAAGCCAUUUGCGCUGUUUUCUCAAAUUAUAGUUUGCUUAAUUU-AAGC-----------
(((....((((((((((((..(((-(..(------------((.....))).--.)))).))))))))))))....)))............(((((...)-))))----------- ( -25.90)
>DroYak_CAF1 20162 89 - 1
-AGUCAUUAGUGCAGGUGGAGUUU-UUUG------------UUUCGCUGGCC--GGAAAGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUUGCCUAAUUUGAAGC-----------
-......((((((((((((..(((-(..(------------((.....))).--.)))).)))))))))))).....((((((((.........))))))))...----------- ( -24.40)
>DroAna_CAF1 25738 112 - 1
-AGUCAUUAGUGCAGGUGGAGUUU-UUUUUAAUUUUUGUAUUUUUUUUGGCC--GGAAAGCGAUUUGCACUGUUUUCUCAAAUUAAAGUUGAUUUCAUAUAUCUACAAGGCUACAA
-((((..(((.....((((((((.-.(((((((((..((..........)).--((((((((........)))))))).)))))))))..))))))))....)))...)))).... ( -19.50)
>consensus
_AGUCAUUAGUGCAGGUGGAGUUU_UUUG____________UUUCGCUGGCC__GGAAAGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUGGCUUAAUUUGAAGCCAAGCUUGCGA
.......((((((((((((((.....................)))(((..(....)..))))))))))))))................(((((((......)))))))........ (-16.45 = -18.40 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:24 2006