Locus 239

Sequence ID X_DroMel_CAF1
Location 822,403 – 822,504
Length 101
Max. P 0.977255
window361

overview

Window 1

Location 822,403 – 822,504
Length 101
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 83.38
Mean single sequence MFE -24.53
Consensus MFE -18.90
Energy contribution -18.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.50
Structure conservation index 0.77
SVM decision value 1.79
SVM RNA-class probability 0.977255
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 822403 101 - 22224390
UAUUAUGUUGGUAACUAUGUGUUAUCAGCAUCAACAUUUUGUCCCCUGUGGGGCU------CCAAGGUCCUCUCUCCUGUCUC-CCCUGCCACCCUGUCUUCCCGCCU
....(((((((((((.....)))))))))))................(..(((..------...(((........))).....-)))..).................. ( -22.90)
>DroSec_CAF1 23743 92 - 1
UAUUAUGUUGGUAACUAUGUGUUAUCAGCAUCAACAUUUUGUCCCCUGUGGGGCU------CCAAGGUCCUC---------UC-CCCCGCCACCCCGUCUCCCCGCUU
....(((((((((((.....)))))))))))................((((((..------....(((....---------..-.......)))......)))))).. ( -23.02)
>DroSim_CAF1 20108 92 - 1
UAUUAUGUUGGUAACUAUGUGUUAUCAGCAUCAACAUUUUGUCCCCUGUGGGGCU------CCAAGGUCCUC---------UC-CCCCGCCACCCCGUCUCCCCGCUU
....(((((((((((.....)))))))))))................((((((..------....(((....---------..-.......)))......)))))).. ( -23.02)
>DroEre_CAF1 23799 93 - 1
UAUUAUGUUGGUAACUAUGUGUUAUCAGCAUCAACACUUUGUCCCCUGUGGGGCU------CCAAGGUCCUA---------CCUCCCCGCAUCCCCGCAUCCCCGCAG
....(((((((((((.....)))))))))))..............((((((((..------...(((.....---------)))....((......))..)))))))) ( -29.20)
>DroYak_CAF1 20437 89 - 1
UAUUAUGUUGGUAACUAUGUGUUAUCAGCAUCAACAUUUUGUCCCCUGUGGGGCUCCAGCUCCAAGGUCCUU---------CCCCC-----UCGCCG----CCCGCA-
....(((((((((((.....))))))))))).............(((.((((((....))))))))).....---------.....-----..((..----...)).- ( -24.50)
>consensus
UAUUAUGUUGGUAACUAUGUGUUAUCAGCAUCAACAUUUUGUCCCCUGUGGGGCU______CCAAGGUCCUC_________UC_CCCCGCCACCCCGUCUCCCCGCAU
....(((((((((((.....))))))))))).........(((((....)))))...................................................... (-18.90 = -18.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:43 2006