Locus 2383

Sequence ID X_DroMel_CAF1
Location 6,355,182 – 6,355,285
Length 103
Max. P 0.693202
window3877

overview

Window 7

Location 6,355,182 – 6,355,285
Length 103
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 77.27
Mean single sequence MFE -18.53
Consensus MFE -10.81
Energy contribution -11.93
Covariance contribution 1.11
Combinations/Pair 1.05
Mean z-score -1.92
Structure conservation index 0.58
SVM decision value 0.33
SVM RNA-class probability 0.693202
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6355182 103 + 22224390
AAACAUUGAAUAUUUCGAAUGCCGUAAA-CUA-UAAACUCCCUUCAAAUUGGCU----------UCAAAUUAACCAAAUUAGGCUUAUUCAAUGAUA----UGACAAGUCC-CAAAAAUA
...(((((((((....(((.((((....-...-................)))))----------)).......((......))..)))))))))...----..........-........ ( -14.90)
>DroSec_CAF1 39232 117 + 1
AAACAUUGAAUAGUUCGAAUGCCGCAAG-CUU-UAAACUUCCUGCAAAUUGGCUUUAAAAGUCUUCAAAUUAACCA-AUUCGGCUUAUUCAAUGAUACCAAUACCAAGUCCCCAAAAAUA
...((((((((((..(((((((.(.(((-...-....))).).)).....((((.....)))).............-)))))..)))))))))).......................... ( -20.50)
>DroEre_CAF1 37210 112 + 1
AAACAUUGUAUAGUUCGAAUACCGGAAGGCUUUCAAAUCCCCAGCAAAUCGGCUUUAAAAGUGCUCAAAUAAAGCA-AUUCGGCUUAUUCAAUGAUA------CCAAGUCC-CAAUAAUA
...(((((.((((..(((((.((((...(((...........)))...)))).........((((.......))))-)))))..)))).)))))...------........-........ ( -20.20)
>consensus
AAACAUUGAAUAGUUCGAAUGCCGCAAG_CUU_UAAACUCCCUGCAAAUUGGCUUUAAAAGU__UCAAAUUAACCA_AUUCGGCUUAUUCAAUGAUA____U_CCAAGUCC_CAAAAAUA
...((((((((((.((((((((((.........................))))........................)))))).)))))))))).......................... (-10.81 = -11.93 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:11 2006