Locus 2382

Sequence ID X_DroMel_CAF1
Location 6,351,434 – 6,351,554
Length 120
Max. P 0.500000
window3876

overview

Window 6

Location 6,351,434 – 6,351,554
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -22.27
Consensus MFE -19.27
Energy contribution -19.60
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.87
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6351434 120 + 22224390
UCUUCCUUUCUAAGCAAAAAUUUGUUAUCGCCAUUGGCAGGCUGAACCAGUGAAAAAUACUAUAUUACAAGGUACAUAUACAUCUCUAUAUAUAGUAUAUAUACCUCUAACGAGCCAUCC
............(((((....)))))...(((...))).((((......((((...........)))).(((((.((((((.............)))))).)))))......)))).... ( -19.92)
>DroSec_CAF1 35443 120 + 1
UCUUCCUUUCUAAGCAAAAAUUUGUUAUCGCCAUUGGCAGGCUGAACCAGUGAAAAAUACUAUAUUACAAGGUACAUAUACAUCUCUAUAUAUAGUAUAUAUAGCUCUAACGAGCCAUCC
((..(((.....(((((....)))))...(((...))))))..))....(((....(((((((((....((((........))))....))))))))).....((((....))))))).. ( -23.00)
>DroEre_CAF1 33564 120 + 1
UCUUCCGUUCUAAGCAAAAAUUUGUUAUCGCCAUUGGCAGGCUGAACCAGUGAAAAAUACUAUAUUACAAGGUACAUAUACAUCUCAAUAUAUAGUAUAUAUAGCUCUAACGAGCCAUCC
......((((..(((((....)))))...(((.......))).))))..(((....(((((((((....((((........))))....))))))))).....((((....))))))).. ( -23.90)
>consensus
UCUUCCUUUCUAAGCAAAAAUUUGUUAUCGCCAUUGGCAGGCUGAACCAGUGAAAAAUACUAUAUUACAAGGUACAUAUACAUCUCUAUAUAUAGUAUAUAUAGCUCUAACGAGCCAUCC
............(((((....)))))...(((...))).((((.....(((.....(((((((((....((((........))))....))))))))).....)))......)))).... (-19.27 = -19.60 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:10 2006