Locus 2379

Sequence ID X_DroMel_CAF1
Location 6,348,955 – 6,349,057
Length 102
Max. P 0.969842
window3870

overview

Window 0

Location 6,348,955 – 6,349,057
Length 102
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -33.83
Consensus MFE -22.35
Energy contribution -22.47
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.97
Structure conservation index 0.66
SVM decision value 1.65
SVM RNA-class probability 0.969842
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6348955 102 - 22224390
UAACGGCGCACCUCGACUCCGACUCCUAGACGA------------AGUCGCAGUCU------CAGUGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUA
(((((((((((...((((.(((((.(.....).------------))))).)))).------..))))..........(((((.((((((.........)))))).)))))))))))).. ( -33.90)
>DroSec_CAF1 33202 100 - 1
UAACGGC--ACCUCGA------CUCCUAGACGA------------AGUCGCAGUCGCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUAUAUUUACGUGGCUGUUAUA
(((((((--...((((------(((...((((.------------...)((....)).)))...))))))).......(((((.((((((.........)))))).)))))))))))).. ( -32.70)
>DroEre_CAF1 31002 112 - 1
UAACGGC--ACCUCGA------CUCCUAGACGAACUCAUAGUCGUAGUCGUAGUCGCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUA
(((((((--...((((------(((((((((..((........)).))).)))..((....)).))))))).......(((((.((((((.........)))))).)))))))))))).. ( -34.90)
>consensus
UAACGGC__ACCUCGA______CUCCUAGACGA____________AGUCGCAGUCGCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUA
(((((((.......................................((((.(.((.........)).)))))......(((((.((((((.........)))))).)))))))))))).. (-22.35 = -22.47 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:05 2006