Locus 2376

Sequence ID X_DroMel_CAF1
Location 6,343,762 – 6,343,863
Length 101
Max. P 0.594576
window3864

overview

Window 4

Location 6,343,762 – 6,343,863
Length 101
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 80.56
Mean single sequence MFE -36.31
Consensus MFE -23.06
Energy contribution -22.50
Covariance contribution -0.56
Combinations/Pair 1.18
Mean z-score -1.74
Structure conservation index 0.64
SVM decision value 0.12
SVM RNA-class probability 0.594576
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6343762 101 + 22224390
CGACCGCUUCCAAUUGCGGUAUUUGCGUGCCUGCAGCUUCUUGUGGAGAAGUUGCGAG----GAAACUCAGUGGC-CAAAGGAAUGGAAAGGGUC--GAGAGAUU----------UGU
(((((..(((((...(((.....)))(.(((.((((((((((...))))))))))(((----....)))...)))-).......)))))..))))--).......----------... ( -39.40)
>DroSec_CAF1 28204 111 + 1
CGACCGCUUCCAAUUGCGGUAUUUGCGUGCCUGCAGCGUCUUAGGUAGAAGUUGCGAG----GAAACUCAUUGGCCCAAAGGAAUGGAAAGGG-C--GGGAGAUUGGGGAGAAAGUGU
(..((.(((((......(((((....))))).(((((.(((.....))).)))))(((----....)))....((((.............)))-)--)))))....))..)....... ( -34.52)
>DroEre_CAF1 26057 114 + 1
CGGCCGCUUCCAAUUGCGGUAUUUGCGUGCCUCUAGCUUCUUAGAGAGGAGUUGGGAGUACUGGGAGUCACUGGC-AAAAGAAGUGGAAAGGG-C--GUGAGAUUGGUGAGAAAUUGG
...(((((((...(((((((((((.(((((..((((((((((...))))))))))..)))).).)))).))).))-))..)))))))......-(--....)................ ( -36.00)
>DroYak_CAF1 24874 112 + 1
CGACCGCUUCCAAUUGCGGUAUUUGCGUGCCUCUAACUUCUUAGGGAGCAGUUGGGAG----GAGACUCAAUGGC-CAAAGUAGUGGAAAGGG-CUAGAGAGAUUGGGGAGAAAGUGG
(..((.((((((((((((((((....)))))(((((....)))))..)))))))))))----....(((..((((-(..............))-)))..)))....))..)....... ( -35.34)
>consensus
CGACCGCUUCCAAUUGCGGUAUUUGCGUGCCUCCAGCUUCUUAGGGAGAAGUUGCGAG____GAAACUCAAUGGC_CAAAGGAAUGGAAAGGG_C__GAGAGAUUGGGGAGAAAGUGG
...((..(((((.....(((((....)))))((((((((((.....))))))))))............................))))).)).......................... (-23.06 = -22.50 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:00 2006