Locus 2375

Sequence ID X_DroMel_CAF1
Location 6,338,894 – 6,338,991
Length 97
Max. P 0.862072
window3863

overview

Window 3

Location 6,338,894 – 6,338,991
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 71.83
Mean single sequence MFE -24.30
Consensus MFE -16.73
Energy contribution -17.07
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.69
SVM decision value 0.83
SVM RNA-class probability 0.862072
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6338894 97 + 22224390
UAUU--CCUCCU--UUGGC--CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGUUGGGCCG-----------------AAAGCAGAAGCC
..((--(..(.(--(((((--(.(.(((((.((((((....)))))).((.(((((.((.....))))))).)).....))))).))))))-----------------)).)..)))... ( -31.70)
>DroPse_CAF1 20787 87 + 1
UUUUUGCCUCAUUUUUUGUUGUACCACCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGCCCC---------------------------------
....(((..((.....))..)))...((((.((((((....)))))).((.(((((.((.....))))))).)).....))))....--------------------------------- ( -17.50)
>DroSec_CAF1 23368 97 + 1
UAUU--CCUCCU--UUGGC--CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAUUACGUGGUUGGGCAG-----------------AAAGCAAAAGCC
....--....((--((.((--(.(.(((((.((((((....)))))).((.(((((.((.....))))))).)).....))))).))))..-----------------))))........ ( -26.10)
>DroEre_CAF1 21189 110 + 1
UAUU--CCUCUU--UCGGC--CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGUGGAA----AAAAAUAAAAAGCAAAAAAGCAAAAGGC
....--(((.((--((.((--((((((....((((((....)))))).((.(((((.((.....))))))).)).))).))))).)))----)..........((......))...))). ( -26.60)
>DroYak_CAF1 19919 104 + 1
UAUU--CCGCUU--UCGGC--CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAACGAAGUACGUGGUGGAACACAAAAAAUAAAAAG----------GAAGGC
..((--((((..--...))--..(..((((.((((((....)))))).((.(((((.((.....))))))).)).....))))..).................)----------)))... ( -26.40)
>DroPer_CAF1 24090 87 + 1
UUUUUGCCUCAUUUUUUGUUGUACCACCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGCCCC---------------------------------
....(((..((.....))..)))...((((.((((((....)))))).((.(((((.((.....))))))).)).....))))....--------------------------------- ( -17.50)
>consensus
UAUU__CCUCAU__UUGGC__CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGUCGA____________________________AAG_C
.........................(((((.((((((....)))))).((.(((((.((.....))))))).)).....))))).................................... (-16.73 = -17.07 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:59 2006