Locus 2372

Sequence ID X_DroMel_CAF1
Location 6,331,457 – 6,331,550
Length 93
Max. P 0.928973
window3859

overview

Window 9

Location 6,331,457 – 6,331,550
Length 93
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 77.83
Mean single sequence MFE -25.30
Consensus MFE -19.44
Energy contribution -19.44
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.77
SVM decision value 1.19
SVM RNA-class probability 0.928973
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6331457 93 - 22224390
UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC-AAGCCA------UGGCCAAAAACAGGCCUUACACUGU------------AAC--UGAAA----GUGGUAGGUGG
.(((((.....(((((...((((...))))...))))).....-..((((------(((((.......))))((((...))------------)).--.....----)))))))))). ( -30.50)
>DroSec_CAF1 16069 86 - 1
UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC-AAGCCA------UGGCCAAAAACAGGCCGUACACUGA------------AAC--UGGAA----GUGG-------
...........(((((...((((...))))...))))).....-.....(------(((((.......)))))).((((..------------...--....)----))).------- ( -24.40)
>DroSim_CAF1 9735 98 - 1
UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC-AAGCCA------UGGCCGAAAACAGGCCGUACACUGAAAAUGGAACUGAAAC--UGGAA----GUGG-------
...........(((((...((((...))))...)))))...((-(..(((------(((((.......))))))...((......)).........--.))..----.)))------- ( -26.10)
>DroEre_CAF1 13686 83 - 1
UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC-AAGCCAAGCGAUUGGCCAAAAACAGGCCUCGAACUGG------------AAC----------------------
...........(((((...((((...))))...))))).....-...(((..(((..((((.......)))))))...)))------------...---------------------- ( -24.20)
>DroYak_CAF1 12370 93 - 1
UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCCCAAAUCA------UGGCCAAAAGCAGGCCUGACACUGA------------AACACUGUAACACUGUAA-------
(((........(((((...((((...))))...))))).........(((------.((((.......)))))))...)))------------..................------- ( -21.30)
>consensus
UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC_AAGCCA______UGGCCAAAAACAGGCCUUACACUGA____________AAC__UGGAA____GUGG_______
...........(((((...((((...))))...)))))...................((((.......)))).............................................. (-19.44 = -19.44 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:56 2006