Locus 2370

Sequence ID X_DroMel_CAF1
Location 6,329,367 – 6,329,468
Length 101
Max. P 0.515312
window3856

overview

Window 6

Location 6,329,367 – 6,329,468
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.79
Mean single sequence MFE -31.73
Consensus MFE -25.24
Energy contribution -25.13
Covariance contribution -0.11
Combinations/Pair 1.19
Mean z-score -1.08
Structure conservation index 0.80
SVM decision value -0.04
SVM RNA-class probability 0.515312
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6329367 101 + 22224390
AUAUUUCUAGCAAACAAAUAAUAUAAUUCACCUGGAUCGUAUCUCCGCGUUGGCCAGUUCGGUGCGGGGAUAUGGCUUAGAAGCGGCCACAGCGGUUUCUA
........(((..............((((....))))((((((((((((..((.....))..)))))))))))))))(((((((.((....)).))))))) ( -32.90)
>DroVir_CAF1 16330 100 + 1
CGAUUUCAUUCCA-AGACAACUGUAACGCACCUGGAACGUAUCUCGGCAUUGGCCAGCUCGGUGCGCGGAUAUGGCUUAGACGCGGCCACAGCUGUUUCCA
.............-(((((.((((..(((..((((..((((((.(((((((((....).)))))).))))))))..))))..)))...)))).)))))... ( -31.90)
>DroPse_CAF1 11628 97 + 1
U---AUC-AAUGAGCAACGAUUGAGACUUGCCUGGACCGUAUCUCAGCGUUGGCCAAUUCAGUGCGGGGAUAUGGCUUGGAGGCGGCCACAGCGGUUUCCA
.---.((-(((........))))).........((.(((((((((.(((((((.....))))))).)))))))))))(((((((.((....)).))))))) ( -31.40)
>DroSec_CAF1 14033 101 + 1
AAAGAUCAAGCGAGAAAGUAAUAUAAUUCACCUGGAUCGUAUCUCGGCGUUGGCCAAUUCGGUGCGGGGAUAUGGCUUGGAGGCGGCCACAGCGGUUUCCA
.......((((..............((((....))))((((((((.(((..((.....))..))).))))))))))))((((((.((....)).)))))). ( -31.70)
>DroSim_CAF1 7445 101 + 1
AAUGAUCAAACGAGAAAGUAAUAUAAUUCACCUGGAUCGUAUCUCGGCGUUGGCCAAUUCGGUGCGGGGAUAUGGCUUGGAGGCGGCCACAGCGGUUUCCA
...............((((......((((....))))((((((((.(((..((.....))..))).))))))))))))((((((.((....)).)))))). ( -29.70)
>DroYak_CAF1 10218 100 + 1
AAAGCUGAAACAAGUAAUUAAUAU-CUGUACCUGGAUCGUAUCUCGGCGUUGGCUAGUUCGGUGCGGGGAUAUGGCUUGGAAGCGGCCACAGCGGUUUCCA
.(((((((..((.(((........-...))).))..))(((((((.(((..((.....))..))).))))))))))))((((((.((....)).)))))). ( -32.80)
>consensus
AAAGAUCAAACGAGAAACUAAUAUAAUUCACCUGGAUCGUAUCUCGGCGUUGGCCAAUUCGGUGCGGGGAUAUGGCUUGGAGGCGGCCACAGCGGUUUCCA
.................................((.(((((((((.(((((((.....))))))).)))))))))))(((((((.((....)).))))))) (-25.24 = -25.13 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:53 2006