Locus 2367

Sequence ID X_DroMel_CAF1
Location 6,325,281 – 6,325,373
Length 92
Max. P 0.962935
window3852

overview

Window 2

Location 6,325,281 – 6,325,373
Length 92
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.17
Mean single sequence MFE -33.18
Consensus MFE -21.93
Energy contribution -22.23
Covariance contribution 0.31
Combinations/Pair 1.08
Mean z-score -2.57
Structure conservation index 0.66
SVM decision value 1.55
SVM RNA-class probability 0.962935
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6325281 92 + 22224390
GAACGGUU-----------------------CUUUAU-----CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUUACACGGAUGGUAAUAGUU
...(((..-----------------------......-----))).(((((.(((((((((........)))))))..((((.((((((.......)))))).).))).))))))).... ( -27.60)
>DroPse_CAF1 7249 120 + 1
GAACGCAUACGGAAACUGGCACUCGUGCGGGCACUCUCUGCCCUGCAGUGCCAUGCAAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACAAAGCCAUUACACGGAUGGCAAUAGUU
....((((..(....).((((((.(((.(((((.....))))))))))))))))))..((((.....)))).((.((.((((.((((((.......)))))).).))).)).))...... ( -42.80)
>DroSec_CAF1 10057 91 + 1
GAACGGUU-----------------------CUUUCU-----CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUU-CACGGAUGGUAAUAGUU
...(((..-----------------------......-----))).(((((.(((((((((........)))))))..(((..((((((.......))))))-..))).))))))).... ( -29.50)
>DroEre_CAF1 7648 92 + 1
GAACGGUU-----------------------CUUUCU-----CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUUACACGGAUGGUAAUAGUU
...(((..-----------------------......-----))).(((((.(((((((((........)))))))..((((.((((((.......)))))).).))).))))))).... ( -27.60)
>DroYak_CAF1 6119 92 + 1
GAACGGUU-----------------------CUUUCU-----CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUUACACGGAUGGUAAUAGUU
...(((..-----------------------......-----))).(((((.(((((((((........)))))))..((((.((((((.......)))))).).))).))))))).... ( -27.60)
>DroPer_CAF1 7412 120 + 1
GAACGCAUACGGAAACUGGCACUCGUGCGGGCACUCUCUGCCCUGCAGUGCCAUGCAAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACAAAGCCAUUACAUGGAUUGCAAUAGUU
.(((((((..(....).((((((.(((.(((((.....))))))))))))))))))...((((((((((.((((((...(....)((.....))..))))))...))))))))))..))) ( -44.00)
>consensus
GAACGGUU_______________________CUUUCU_____CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUUACACGGAUGGUAAUAGUU
............................................(((((((...(((((((........)))))))..((((.((((((.......)))))).).)))...))))).)). (-21.93 = -22.23 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:49 2006