| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,305,736 – 6,305,854 |
| Length | 118 |
| Max. P | 0.646842 |
| Location | 6,305,736 – 6,305,854 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.40 |
| Mean single sequence MFE | -37.33 |
| Consensus MFE | -21.99 |
| Energy contribution | -23.10 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.646842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6305736 118 + 22224390 UACUUUCCUGGGCUGCUUUGCCUUUGCCUUUGCCAAAUUGUCUUAAUAGAUUUAUGGGCGUACGCAAAAUGGCUGCACUUGGCCC--GACCGGAAGUGGCCAAAAAAAAAAAAAGGAGAU ...((((((....(((...((((((((...((((.....((((....)))).....))))...)))))..))).))).((((((.--...(....).))))))..........)))))). ( -36.30) >DroPse_CAF1 24948 106 + 1 UGCUUUCCUGUGC-------CUUUUGGCUUUGCCAAAUUGUCUUAAUAGAUUUAUGGGCGUACGCAAAGCGGCUGCACUUUGCCGAGGCCCGGAAGUGGCUACGGCCA-------UGGCU .(((((((.(.((-------(((...(((((((.....((((((((.....))).)))))...)))))))(((........))))))))).))))(((((....))))-------)))). ( -41.20) >DroSec_CAF1 38135 112 + 1 UACUUUCCUGGGCUCCUUUGCCUUUGCCUUUGCCAAAUUGUCUUAAUAGAUUUAUGGGCGUACGCAAAAUGGCUGCACUUGGCCC-GGACCGGAAGUGGCCAAAAAAA-------GAGAU ((((((((((((((.....((((((((...((((.....((((....)))).....))))...)))))..))).......)))))-))...)))))))..........-------..... ( -34.50) >consensus UACUUUCCUGGGCU_CUUUGCCUUUGCCUUUGCCAAAUUGUCUUAAUAGAUUUAUGGGCGUACGCAAAAUGGCUGCACUUGGCCC_GGACCGGAAGUGGCCAAAAAAA_______GAGAU ..........(((......)))(((((...((((.....((((....)))).....))))...)))))..(((..(..(((((....).))))..)..)))................... (-21.99 = -23.10 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:49 2006