Locus 2363

Sequence ID X_DroMel_CAF1
Location 6,302,975 – 6,303,072
Length 97
Max. P 0.972015
window3848

overview

Window 8

Location 6,302,975 – 6,303,072
Length 97
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 90.79
Mean single sequence MFE -23.77
Consensus MFE -19.58
Energy contribution -20.45
Covariance contribution 0.87
Combinations/Pair 1.08
Mean z-score -2.74
Structure conservation index 0.82
SVM decision value 1.69
SVM RNA-class probability 0.972015
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6302975 97 + 22224390
CAUGUAUCUGCAUCUGCAGCUGCA------ACUGUAUCUGAAUCUUUGUGGCAUCUUUUGUAUCGCAAAGAUUUGUUUACUCCUCGCUACGACUUUUGUUUUG
..((((.((((....)))).))))------...(((..(((((((((((((((.....)))..))))))))))))..)))....................... ( -24.30)
>DroSec_CAF1 35420 92 + 1
CA----UCUGCAUCUGCAGCUGCA------ACUGUAUCUGAAUCUUUGUGGCAUCUUUUGUAUCGCAAAGAUUUGUUUACUCCUCACU-CGACUUUUGUUUUG
((----.((((....)))).))..------...(((..(((((((((((((((.....)))..))))))))))))..)))........-.............. ( -20.60)
>DroSim_CAF1 33029 96 + 1
CAUGUAUCUGCAUCUGCAGCUGCA------ACUGUAUCUGAAUCUUUGUGGCAUCUUUUGUAUCGCAAAGAUUUGUUUACUCCUCACU-CGACUUUUGUUUUG
..((((.((((....)))).))))------...(((..(((((((((((((((.....)))..))))))))))))..)))........-.............. ( -24.30)
>DroYak_CAF1 32600 102 + 1
CAUGUAUCUGCAUCUGCAUCUGCAUUUGAAUCUGUAUCUGAAUCUUUGUGGCGUCUUUUAUGUCGCAAAGAUUUGUUUACUCCACGCU-CGACUUUUGUUUUG
.(((((..(((....)))..)))))........(((..((((((((((((((((.....))))))))))))))))..)))........-.............. ( -25.90)
>consensus
CAUGUAUCUGCAUCUGCAGCUGCA______ACUGUAUCUGAAUCUUUGUGGCAUCUUUUGUAUCGCAAAGAUUUGUUUACUCCUCACU_CGACUUUUGUUUUG
..((((.((((....)))).)))).........(((..((((((((((((..((.....))..))))))))))))..)))....................... (-19.58 = -20.45 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:46 2006