Locus 2362

Sequence ID X_DroMel_CAF1
Location 6,302,325 – 6,302,431
Length 106
Max. P 0.577010
window3847

overview

Window 7

Location 6,302,325 – 6,302,431
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.45
Mean single sequence MFE -27.34
Consensus MFE -17.86
Energy contribution -18.55
Covariance contribution 0.69
Combinations/Pair 1.09
Mean z-score -1.67
Structure conservation index 0.65
SVM decision value 0.09
SVM RNA-class probability 0.577010
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6302325 106 - 22224390
GACAAAUAGAUUAGCCAAAAACUUGGCCACAAGGCCGAAACGAAA-GUGGUG-------------CAUUGGGGUGAGGAAAAUGUGUUGGAAAAAGGGACAGGCACUGGACAGGAAGUCG
(((..........(((.....(((.(((.(((.((....((....-))...)-------------).))).))).)))....(((.((.......)).)))))).((....))...))). ( -24.60)
>DroSec_CAF1 34740 118 - 1
GACAAAUAGAUUAGCCAAAAACUUGGCCACAAGGCCGAAAGGAAA-GUGGCGGCAAAAGUCGCGGGGUUUGGGUG-GGAAAAUUCGUUGGAAAAAGGGACAGGCACUGGACAGGAAGUCG
(((.(((..(((..((....(((..(((.((...((....))...-.))(((((....)))))..)).)..))).-))..)))..)))........(..(((...)))..).....))). ( -31.30)
>DroSim_CAF1 32349 118 - 1
GACAAAUAGAUUAGCCAAAAACUUGGCCAGGAGGCCGAAAGGAAA-GUGGUGGUAAAAGUCGCGGGGUUUGGGUG-GGAAAAUUCGUUGGAAAAAGGGACAGGCACUGGACAGGAAGUCG
(((..........((((...((((((((....)))).......))-))..))))....(((.(((.(((((....-......(((....))).......))))).)))))).....))). ( -26.44)
>DroYak_CAF1 31961 110 - 1
GACAAAUAGAUUAACCAAAAACUUGGCCACAAGGCCGAAAGGGAAUGUGG---CAGCAGUCGAGGGG-----AGG-GGGAAAUUCGUUGGAAAAAGGGACAGG-ACUGGACAGGAAGUCG
(((.....(......).....((((((((((...((....))...)))))---)..(((((....((-----(..-......)))(((.........)))..)-))))..))))..))). ( -27.00)
>consensus
GACAAAUAGAUUAGCCAAAAACUUGGCCACAAGGCCGAAAGGAAA_GUGGUG_CAAAAGUCGCGGGGUUUGGGUG_GGAAAAUUCGUUGGAAAAAGGGACAGGCACUGGACAGGAAGUCG
(((...........((((....((((((....))))))..........................((((((.........)))))).))))......(..(((...)))..).....))). (-17.86 = -18.55 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:45 2006