Locus 2360

Sequence ID X_DroMel_CAF1
Location 6,290,370 – 6,290,479
Length 109
Max. P 0.984137
window3845

overview

Window 5

Location 6,290,370 – 6,290,479
Length 109
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 91.86
Mean single sequence MFE -35.05
Consensus MFE -30.64
Energy contribution -30.95
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -2.64
Structure conservation index 0.87
SVM decision value 1.96
SVM RNA-class probability 0.984137
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6290370 109 + 22224390
GGCUCCGGCAAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGGAAAAAUCGGCGAUGAAAAGCCUAUGUAGAGCAGUUUGCAACGCUCGCUUGAGCAA
.((((.(((...((((((((((((((((..((((((...(....)))))))..))......(((........))))))))))))))))).((...))..))).)))).. ( -37.30)
>DroSec_CAF1 27456 107 + 1
GGAUUG-CGGAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGGAA-AAUCGGCGAUGAAAAGCCUAUGUAGAGCAGUUUGCAACGCUCGCUUGAGCAA
...(((-((...((((((((((((((((..((((((...(....)))))))..)).-....(((........)))))))))))))))))))))).((((....)))).. ( -36.50)
>DroSim_CAF1 25379 108 + 1
GGCUCCGGCAAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGGAA-AAUCGGCGAUGAAAAGCCUAUGUAGAGCAGUUUGCAACGCUCGCUUGAGCAA
.((((.(((...((((((((((((((((..((((((...(....)))))))..)).-....(((........))))))))))))))))).((...))..))).)))).. ( -37.30)
>DroYak_CAF1 24927 108 + 1
GGCUCCGACAAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGAAA-AAACGGCGACGCAGAGCCGAUUUAGAGCAGUUUUCAACGCUCACUUGAGCAA
......((....((((((((((....(((.((((((...(....))))))).))).-...((((........))))...)))))))))).))...((((....)))).. ( -29.10)
>consensus
GGCUCCGGCAAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGGAA_AAUCGGCGAUGAAAAGCCUAUGUAGAGCAGUUUGCAACGCUCGCUUGAGCAA
............((((((((((((((((..((((((...(....)))))))..))......(((........)))))))))))))))))......((((....)))).. (-30.64 = -30.95 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:43 2006