| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,284,398 – 6,284,492 |
| Length | 94 |
| Max. P | 0.564507 |
| Location | 6,284,398 – 6,284,492 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 72.91 |
| Mean single sequence MFE | -22.61 |
| Consensus MFE | -8.96 |
| Energy contribution | -9.15 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6284398 94 - 22224390 ACAUAGGAUCAUCC-----AUCGCAUUUCCAUCCUUAUCGAAAUGCUGUCGGG----UUUUCUUUUGUCCGACUUACCUUUGCGGACGUUUCACUCUGUAUUC (((.((((..((((-----((.(((((((..........))))))).)).)))----)..))....(((((.(........))))))......)).))).... ( -22.00) >DroPse_CAF1 5949 89 - 1 UCAAAGGUGAAUCGGGGAGAAGAGAUUUG------UAUCGAACU-----UGAAUUUUUGUUCUUUUGUCUGGCUUACUUUUGUGGAUAUUUUACGGU---UUC .(((((((((..((((.(((((((.....------..(((....-----))).......))))))).))))..)))))))))...............---... ( -21.24) >DroSec_CAF1 21281 94 - 1 ACAUAGGAUCAUCC-----AUGGCAUUUCCUUCCUUAUCGAAAUGCUGUCGGG----UUUUCUUUUGUCCGACUUACCUUUGCGGACGUUUCACUCUGUAUUC (((.((((..((((-----((((((((((..........)))))))))).)))----)..))....(((((.(........))))))......)).))).... ( -24.90) >DroYak_CAF1 18304 90 - 1 ACAUAGGAUCAUCC-----AUCGCAUUUC----CUUAUCGAAAUGCUGUCGGG----UUUUCUUUUGUCUGACUUACCUUUGCGGACGUUUCGGUUUGUAUUC (((.((((..((((-----((.(((((((----......))))))).)).)))----)..)))).)))............(((((((......)))))))... ( -22.30) >consensus ACAUAGGAUCAUCC_____AUCGCAUUUC____CUUAUCGAAAUGCUGUCGGG____UUUUCUUUUGUCCGACUUACCUUUGCGGACGUUUCACUCUGUAUUC ......................(((((((..........)))))))...................((((((.(........)))))))............... ( -8.96 = -9.15 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:32 2006