| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,273,296 – 6,273,396 |
| Length | 100 |
| Max. P | 0.666222 |
| Location | 6,273,296 – 6,273,396 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.79 |
| Mean single sequence MFE | -22.96 |
| Consensus MFE | -2.67 |
| Energy contribution | -4.59 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.12 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6273296 100 - 22224390 CUGAGCGAAUAUUCGGUGAUAAUAGAG----UUUUUUGGACACAAAAUUCUUUAGGUUAUUAGAAAUUAGCUCAAUA-U---------------AAAUGCUAAUACUAAUUAUUUUUAAA .(((((.(((.((..(((((..(((((----..(((((....)))))..))))).)))))..)).))).)))))...-.---------------.......................... ( -20.20) >DroSec_CAF1 15541 111 - 1 CUGAGCGAAUAUUUGGUGAUAAUAGAG----UUU-UUGCAGAUAAAAUUCUUUAGUUUAUGAGAAAUUAGCUCAAUUACAAAAGGUCAGUACUGAAUUGCUAAUACUGAUUAUUUU---- .(((((.(((.(((.((((....((((----(((-(.......)))))))).....)))).))).))).))))).........((((((((.((......)).)))))))).....---- ( -23.70) >DroSim_CAF1 17134 115 - 1 CUGAGCGAAUAUUUGGUGAUAAUAGAG----UUU-UUGCAGAUAAUAUUCUUUAGUUUAUGAGAAAUUAGCUCAAUUACAAAAGGUCAGUACUAAAUUGAUAAUACUGAUUAUUUUUAAA .((((((((((((..(..(.(((...)----)).-)..)....)))))))..((((((.....))))))))))).(((.(((..(((((((.((......)).)))))))..))).))). ( -22.00) >DroEre_CAF1 4606 102 - 1 CUGAGCGAAUAUUCGGUGGUAAUAGAAGUGGCAU-UUGAAGAUACAAAUCUUUUAUUUAUUAGCCACCA-----------------UUGUACCACCAUGCUAGUGCUAAUUAUUGGUAAC ..............(((((((.(((..(((((..-..((((((....)))))).........)))))..-----------------)))))))))).((((((((.....)))))))).. ( -26.92) >DroYak_CAF1 12685 115 - 1 CUGUGCGAAUAUUCGAAGAUAAUAGAG----UUU-UUGAAUUUAAAAAUGGUUAAUAUAUUAGUAAUUAGCUCAAAUAAAGAACGUCAGUACUAAAUUGCUAAUACUGAAUAUUUGUAAC ...((((((((((((....((((...(----(((-(((....))))))).))))...(((((((((((((..(...............)..)).))))))))))).)))))))))))).. ( -21.96) >consensus CUGAGCGAAUAUUCGGUGAUAAUAGAG____UUU_UUGAAGAUAAAAUUCUUUAGUUUAUUAGAAAUUAGCUCAAUUACA_AA_GUCAGUACUAAAUUGCUAAUACUGAUUAUUUUUAAA ......(((((.(((((..................(((((((......)))))))..........((((((...........................))))))))))).)))))..... ( -2.67 = -4.59 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:26 2006