Locus 2346

Sequence ID X_DroMel_CAF1
Location 6,270,913 – 6,271,031
Length 118
Max. P 0.992867
window3818

overview

Window 8

Location 6,270,913 – 6,271,031
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.63
Mean single sequence MFE -37.16
Consensus MFE -32.44
Energy contribution -32.36
Covariance contribution -0.08
Combinations/Pair 1.06
Mean z-score -2.20
Structure conservation index 0.87
SVM decision value 2.36
SVM RNA-class probability 0.992867
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6270913 118 - 22224390
AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCGGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC--GGU
.((((((....(((((..(((((((.......))))))).........))))))))))).(((.(((.((((((...((((((..........))))))...)))))).))).))--).. ( -36.70)
>DroSec_CAF1 13121 118 - 1
AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCGGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC--GGU
.((((((....(((((..(((((((.......))))))).........))))))))))).(((.(((.((((((...((((((..........))))))...)))))).))).))--).. ( -36.70)
>DroSim_CAF1 14745 118 - 1
AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCGGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC--GGU
.((((((....(((((..(((((((.......))))))).........))))))))))).(((.(((.((((((...((((((..........))))))...)))))).))).))--).. ( -36.70)
>DroEre_CAF1 2186 118 - 1
AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCAGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC--GGC
.((((((....(((((..(((((((.......))))))).........))))))))))).(((.(((.((((((...((((((..........))))))...)))))).))).))--).. ( -37.40)
>DroYak_CAF1 10264 120 - 1
AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCAGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAGUUGCGAGGGCAGGGGGC
.((((((....(((((..(((((((.......))))))).........))))))))))).(.((((..((((((...((((((..........))))))...))))))..)))).).... ( -38.30)
>consensus
AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCGGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC__GGU
.((((((....(((((..(((((((.......))))))).........))))))))))).....(((.((((((...((((((..........))))))...)))))).)))........ (-32.44 = -32.36 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:20 2006