| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,270,183 – 6,270,287 |
| Length | 104 |
| Max. P | 0.977315 |
| Location | 6,270,183 – 6,270,287 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.51 |
| Mean single sequence MFE | -28.06 |
| Consensus MFE | -18.55 |
| Energy contribution | -18.60 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.977315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6270183 104 - 22224390 ----UAUAUAUCCAUUUGAUGAAAGUUAACGCUUGAA------------UUCAAAAACUGGCCCAUAACUAGAGUGGUUGCCUAAGUUUGAGUUUUGGAAACAAUAAUUGCAGCCGGCGA ----...........(((((....)))))((((.(((------------((((((....(((((((.......))))..)))....)))))))))((....))............)))). ( -23.60) >DroSec_CAF1 12414 95 - 1 ----UAUAUAUCCAUUAAAUGAAAGU-GACGCUUGAA------------UUCAAA-ACUGGG-CAUAUCUAGAGUG--UGCCUAGUUUGGAG-UUUGCA-ACAAUAA-UGCAGCA-GCGA ----........((((.......)))-).((((.(((------------(((.((-((((((-(((((.....)))--)))))))))).)))-)))(((-.......-)))...)-))). ( -28.80) >DroSim_CAF1 13716 104 - 1 ----UAUAUAUGCAUUAAAUGAAAGUUAACGCUUGAA------------UUCAAAAACUGGCCCAUAUCUAGAGUGGUUGCCUAAGUUUGAGUUUUGCAAACAAUAAUUGCAGCAGGCGA ----.........................((((((((------------((((((....(((((((.......))))..)))....))))))))((((((.......)))))))))))). ( -25.90) >DroEre_CAF1 1409 120 - 1 GCUUUACAUUUCCAUUAAAUGAAAGUUAACGCCUGAAUUUUUGCCUCCGUUCAAAAACUAGCCCAUAUCUAUAGUGGCUGCUUAAGUUUGAGUUUUGGAAACAAUAAUUGCAGCAGGCGA (((((.(((((.....))))))))))...((((((((((.(((..((((((((((....(((((((.......))))..)))....))))))...))))..))).))))....)))))). ( -29.50) >DroYak_CAF1 9584 120 - 1 ACUUUAUAUUUCCAUUAAAUGAAAGUUAACGCCUGCUUUUUGGCCUCCAUUCAAAAACUAGCCCACAUCUACAGUGGCCGCUUAAGUUUGAGUUUUGGAAACAAUAAUUGCAGCAGGCGA (((((.(((((.....))))))))))...((((((((...........(((((((....(((((((.......))))..)))....))))))).(((....))).......)))))))). ( -32.50) >consensus ____UAUAUAUCCAUUAAAUGAAAGUUAACGCUUGAA____________UUCAAAAACUGGCCCAUAUCUAGAGUGGCUGCCUAAGUUUGAGUUUUGGAAACAAUAAUUGCAGCAGGCGA .............................((((((..............((((((....(((((((.......))))..)))....))))))..(((....))).........)))))). (-18.55 = -18.60 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:17 2006