Locus 2336

Sequence ID X_DroMel_CAF1
Location 6,266,275 – 6,266,381
Length 106
Max. P 0.990724
window3794

overview

Window 4

Location 6,266,275 – 6,266,381
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 72.29
Mean single sequence MFE -32.98
Consensus MFE -14.56
Energy contribution -15.62
Covariance contribution 1.06
Combinations/Pair 1.28
Mean z-score -3.02
Structure conservation index 0.44
SVM decision value 2.23
SVM RNA-class probability 0.990724
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6266275 106 - 22224390
AUUAAAUGGAGUGUUCAUUGUCUCUAAGUCGAUGGAUAUUUAAAAGGCAAUGGG---------AUAUGUGUAUCUCUCCGUA-UUUUUAAGUAUCCCCAAAUGGGGG----GGGGGGGGG
........((((((((((((.(.....).))))))))))))...(.(((.....---------...))).).((((((((((-((....)))))((((....)))))----))))))... ( -28.50)
>DroSec_CAF1 8462 120 - 1
AUUAAAUGGAGUGUUCAUUGUCUCCAAGUCGAUGGAUAUUUAAAAGGCAAUGGAUAUAGGGACAUAUGUGUAUCUCUCGGUACUUUUUAAGUGUCCCCAAAGGGGCAUUUUAAAGUGCCA
..........((((((((((((((((......)))).........)))))))))))).((((.(((....))).))))((((((((..(((((((((....))))))))).)))))))). ( -41.50)
>DroSim_CAF1 9820 120 - 1
AUUAAAUGGAGUGUUCAUUGUCUCCAAGUCGAUGGAUAUUUAAAAGGCAAUGGAUAUGGGGACAUAUGUGUAUCUCUCAGUACUUUUUAAGUGUCCCCAAAGGGGCAUUUUAAAGUGCCA
........((((((((((((.(.....).))))))))))))....(((.(((.(((((....))))).)))..........(((((..(((((((((....))))))))).)))))))). ( -39.70)
>DroYak_CAF1 5615 95 - 1
AUUAAAUGGUGUGUUCAUUGUUUCUAAAUCGAUGGGUACUUAAAGGGCAAU----------------AUCUAUCUCUUGAUAG-------AU-GCCAGAAACAGGCAUUUUAAAAU-CUA
...(((((.((((..(((((.........)))))..)))......((((..----------------.((((((....)))))-------))-))).......).)))))......-... ( -22.20)
>consensus
AUUAAAUGGAGUGUUCAUUGUCUCCAAGUCGAUGGAUAUUUAAAAGGCAAUGGA_________AUAUGUGUAUCUCUCGGUACUUUUUAAGUGUCCCCAAAGGGGCAUUUUAAAGUGCCA
........((((((((((((.(.....).))))))))))))....(((.....................(((((....)))))..........((((.....))))..........))). (-14.56 = -15.62 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:59 2006