Locus 2332

Sequence ID X_DroMel_CAF1
Location 6,261,909 – 6,262,029
Length 120
Max. P 0.952209
window3782

overview

Window 2

Location 6,261,909 – 6,262,029
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.08
Mean single sequence MFE -35.43
Consensus MFE -33.92
Energy contribution -34.43
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.96
SVM decision value 1.42
SVM RNA-class probability 0.952209
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6261909 120 + 22224390
CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAACGCAACUUCAGGCAACUUUUUGCCUGCCAGCUCUCUUCAUUUGUAUGCCUGCUUCGUCCAUCAGG
(((.....(((...(((.(((((..((..((((..((.....))((((((((...........(((((((....))))))).))))))))))))..))))))).)))...)))...))). ( -35.70)
>DroSec_CAF1 3583 120 + 1
CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAAAGCAACUUCAGGCAACUUUUUGCCUGCCAGCUCUCUUCAUUUGUAUGCCUGCUUCGUCCUUCAGG
(((.....(((...(((.(((((..((..((((..((.....))((((((((...........(((((((....))))))).))))))))))))..))))))).)))...)))...))). ( -35.70)
>DroSim_CAF1 3517 120 + 1
CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAACGCAACUUCAGGCAACUUUUUGCCUGCCAGCUCUCUUCAUUUGUAUGCCUGCUUCGUCCUUCAGG
(((.....(((...(((.(((((..((..((((..((.....))((((((((...........(((((((....))))))).))))))))))))..))))))).)))...)))...))). ( -35.70)
>DroYak_CAF1 3046 119 + 1
CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAUCACAACUUGAGGCAACUUUUUGCCCGCCAGCUCUCUUCAUUUGUAUGCCUGCU-CGUCCUUCAGG
(((.....(((...(((.(((((..((..((((..((.....))(((((((((.(((.....)))(((((....))))).).))))))))))))..))))))).))).-.)))...))). ( -34.60)
>consensus
CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAACGCAACUUCAGGCAACUUUUUGCCUGCCAGCUCUCUUCAUUUGUAUGCCUGCUUCGUCCUUCAGG
(((.....(((...(((.(((((..((..((((..((.....))((((((((...........(((((((....))))))).))))))))))))..))))))).)))...)))...))). (-33.92 = -34.43 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:48 2006