Locus 2331

Sequence ID X_DroMel_CAF1
Location 6,260,929 – 6,261,046
Length 117
Max. P 0.989002
window3781

overview

Window 1

Location 6,260,929 – 6,261,046
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.95
Mean single sequence MFE -29.20
Consensus MFE -23.11
Energy contribution -23.18
Covariance contribution 0.06
Combinations/Pair 1.18
Mean z-score -3.09
Structure conservation index 0.79
SVM decision value 2.14
SVM RNA-class probability 0.989002
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6260929 117 + 22224390
AUAGAAUCGCAUAUUUUGAGUGUUAAGUGCAGGAAAUCCCUUAUCCCCAUGCCACAUCGUCAUAUUGGCAAGGCAACAAAUCCUUUUGCCAAACACUAAACGCUCUU---UGUGCCAAAC
........(((((....(((((((.((((.(((.....)))........(((((...........))))).(((((.........)))))...)))).)))))))..---)))))..... ( -30.50)
>DroSec_CAF1 2639 111 + 1
AUGAAAUCGCAUAUUUUGAGUGUUAAGUGCAGGAAAUCCCUUAUCCCCAUGCCACA------UAUUGGCAAGGCAGCAAAUCCUUUUGCCAAACACUAAACGCUCUU---UGUGCCAAAC
........(((((....(((((((.((((.(((.....))).....((.(((((..------...))))).))..(((((....)))))....)))).)))))))..---)))))..... ( -32.20)
>DroSim_CAF1 2539 111 + 1
AUAAAAUCGCAUAUUUUGAGUGUUAUGUGCAGGAAAUCCCUUAUCCCCAUGCCACA------UAUUGGCAAGGCAGCAAAUCCUUUUGCCAAACACUAAACGCUCUU---UGUGCCAAAC
........(((((....(((((((..(((.(((.....))).....((.(((((..------...))))).))..(((((....)))))....)))..)))))))..---)))))..... ( -29.60)
>DroYak_CAF1 2092 119 + 1
AUAGAAUUCUAUAUUUUGAGUGUUGAGUGCAGGAAAUUUCUCAUUCCC-UGCCACAUUGUCAUAUUGACAGGACAGCAAAUCCUUUUGCCAAACACUAAACGCUUUUUUUUUUGUCAAAC
((((....)))).....(((((((.((((((((.(((.....))).))-)))....(((((.....)))))....(((((....))))).....))).)))))))............... ( -24.50)
>consensus
AUAAAAUCGCAUAUUUUGAGUGUUAAGUGCAGGAAAUCCCUUAUCCCCAUGCCACA______UAUUGGCAAGGCAGCAAAUCCUUUUGCCAAACACUAAACGCUCUU___UGUGCCAAAC
........(((((....(((((((.((((.(((.....))).......................(((((((((..........))))))))).)))).))))))).....)))))..... (-23.11 = -23.18 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:47 2006