| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,257,230 – 6,257,343 |
| Length | 113 |
| Max. P | 0.668272 |
| Location | 6,257,230 – 6,257,343 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 73.84 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -15.56 |
| Energy contribution | -16.90 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.668272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6257230 113 + 22224390 ACGUGCCUAAUGUCCUGAUGUCCUAAAGUCCUGACAUUUAGUGGCACUGUCCGAAAAUGUGCGAUAAAACCGUGAACAAUUCGUACUAUAGA---UUUGACAGCUUUUUCGAUUAA ..(((((.((((((..(((........)))..))))))....)))))....((((((.(((((.......)))...(((.((........))---.)))...)).))))))..... ( -25.70) >DroSec_CAF1 23835 110 + 1 ACGUGCCUAAUGUCAUGAUGUCCUGAAGUCCUGACAUUU-GUGGCACUGUCCGAAAAUGUGCGAUAAAACCUUGCACAAUUCGUACUAU--A---UUUGACAGCCUUUUCGAUUAA ..(((((.(((((((.(((........))).))))))).-..))))).((.((((..(((((((.......))))))).)))).))..(--(---.((((........)))).)). ( -30.60) >DroYak_CAF1 31733 104 + 1 ACGUGCCUAAUGC---GAU--------GUCCUGACAAUG-CUGGCACUGUACAAAAAUGUGGGUUACAACCUUGCAGUAGUUGGACCAUCCUUCUAUUGACACUUUUAUUUGUUAA ..(((((....((---(.(--------((....))).))-).)))))...(((((...((((((....)))...((((((..((.....))..)))))).))).....)))))... ( -27.10) >consensus ACGUGCCUAAUGUC_UGAUGUCCU_AAGUCCUGACAUUU_GUGGCACUGUCCGAAAAUGUGCGAUAAAACCUUGCACAAUUCGUACUAU__A___UUUGACAGCUUUUUCGAUUAA ..(((((.((((((..(((........)))..))))))....))))).((.((((..((((((.......))))))...)))).)).............................. (-15.56 = -16.90 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:38 2006