Locus 2325

Sequence ID X_DroMel_CAF1
Location 6,256,308 – 6,256,427
Length 119
Max. P 0.837888
window3769

overview

Window 9

Location 6,256,308 – 6,256,427
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.15
Mean single sequence MFE -31.75
Consensus MFE -18.95
Energy contribution -18.82
Covariance contribution -0.13
Combinations/Pair 1.15
Mean z-score -2.43
Structure conservation index 0.60
SVM decision value 0.74
SVM RNA-class probability 0.837888
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6256308 119 - 22224390
CACAUCUCCAUCCCCUCACAUCCUUCCGCCGCCCAGGAGCAUUGCAACGUGUAUUCUAUUCCGGCUAUACCCUGCCACAGGGUAUUAAGCUUUUCAAU-UCGGAAACGCAGGAAAUCUUA
.......................((((((((...((((((((......)))).))))....)))).((((((((...))))))))...((.((((...-...)))).)).))))...... ( -27.40)
>DroSec_CAF1 22964 119 - 1
CACUUCACCAUCCCCACACAUCCAUGCGCCGCGCAGGAGCAUUGCAGCGUGUAUUCUAUUCCGGCAAUACCCUGCCACAGGGUAUUACGCUUUCCAAU-UCGGAAACUCAGGAAAUCUUA
...............((((.(((.((((...)))))))((......))))))......((((((((((((((((...)))))))))..)))((((...-..)))).....))))...... ( -32.80)
>DroEre_CAF1 17486 114 - 1
CAGCCCACCAUUC--UCACUUCCUUCCG-CGCCCGGGAGCACUGCACCGUG--CUCCAUUCCGGCCAAUACCUGCCGCAGGGUAUUACGCUUUCCCAU-UCGGAAACUGAGGAAAUCUUG
.............--....((((((..(-((((..(((((((......)))--)))).....))).(((((((......)))))))..))(((((...-..)))))..))))))...... ( -34.30)
>DroYak_CAF1 30803 115 - 1
CAGUUCACCAUUC--UCACUUCCUUCCG-CGCCCAGGAGCAUUGCACUGUG--CUCUAUUCCGGCUAUACCCUGCCGCAGGGUAUUUCGCUUUUCCAUUUCGGAAACUCAGGAAAUCUUA
.............--....(((((...(-((((..(((((((......)))--)))).....))).((((((((...))))))))...)).(((((.....)))))...)))))...... ( -32.50)
>consensus
CACUUCACCAUCC__UCACAUCCUUCCG_CGCCCAGGAGCAUUGCACCGUG__CUCUAUUCCGGCUAUACCCUGCCACAGGGUAUUACGCUUUCCAAU_UCGGAAACUCAGGAAAUCUUA
...................................(((((((......)))..)))).(((((((.((((((((...))))))))...)))((((......)))).....))))...... (-18.95 = -18.82 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:37 2006