Locus 2324

Sequence ID X_DroMel_CAF1
Location 6,255,990 – 6,256,090
Length 100
Max. P 0.798498
window3768

overview

Window 8

Location 6,255,990 – 6,256,090
Length 100
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.47
Mean single sequence MFE -28.12
Consensus MFE -17.47
Energy contribution -17.16
Covariance contribution -0.31
Combinations/Pair 1.21
Mean z-score -2.03
Structure conservation index 0.62
SVM decision value 0.61
SVM RNA-class probability 0.798498
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6255990 100 + 22224390
GAGUGGCUGGCGGGAUAAGUUGCCUCGC-------GUGGAGCGAGAAGACCAAAU---CAAAAACGGCAGCGACAACAGCAGCGUAAAAUUUAUAAAAA-UGCAGCAAAGA---------
..((.((((.((.(((..(((..(((((-------.....)))))..)))...))---).....)).)))).))....((.((((.............)-))).)).....--------- ( -29.62)
>DroSec_CAF1 22633 109 + 1
GAGUGGCUGGCGGGAUAAGUUGCCUCGC-------GUGGAGCGCGAAGACCAAAU---CAAAAACGGCGGCGACAACAGCAGCGUAAAAUUUAUAAAAAUUGUAGCAAAUAGCAUAA-UA
..((.((((...(.....((((((((((-------(.....))))).((.....)---)......))))))..)..)))).))...............(((((.((.....))))))-). ( -26.20)
>DroEre_CAF1 17170 101 + 1
GAGUGGCUGGCGGGAUAAGUUGCCUUGCGA--------------GCAGACCAAAUCAUCAAAAAUGGCGGCAGCAACAGCAGCGUAAAAUUUAUAAAAA-UGCUGCAAGUA----AAGAA
..((.((((.((((.....(((((....).--------------)))).))...((((.....)))))).)))).)).(((((((.............)-)))))).....----..... ( -23.82)
>DroYak_CAF1 30451 111 + 1
GAGUGGCUGGCGGGAUAAGUUGCCUUGCGAGUCGCGUAGCGCGAGAAGACCAAAU---CAAAAACGGCGGCGACAACCGCAGCGUAAAAUUUAUAAAAA-UGCUGCAAAUA----AA-AA
..((.((((.((.(((..(((..((((((..........))))))..)))...))---).....)).)))).))....(((((((.............)-)))))).....----..-.. ( -32.82)
>consensus
GAGUGGCUGGCGGGAUAAGUUGCCUCGC_______GUGGAGCGAGAAGACCAAAU___CAAAAACGGCGGCGACAACAGCAGCGUAAAAUUUAUAAAAA_UGCAGCAAAUA____AA_AA
..((.(((((((((.........))))).....................((..............)))))).))....((((((................)))))).............. (-17.47 = -17.16 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:36 2006