| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,255,783 – 6,255,958 |
| Length | 175 |
| Max. P | 0.973437 |
| Location | 6,255,783 – 6,255,903 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.10 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -26.02 |
| Energy contribution | -25.78 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.932282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6255783 120 + 22224390 GUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCUGAGCGAAACAAAAAAAAAAAAAAAAACGCAAAAAACGGCGACGAGUCGCGAAAAAGACCAGCA ((.((((((((((....(((((......(((((........))))).....(((((...)))))....................)))))...))))).))))).)).............. ( -29.20) >DroSec_CAF1 22407 114 + 1 GUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCUGAGCGAACUGAAA------UAAAACACGCAAAAAACGGCGAAGAGUCGCGAAAAAGACCAGGA .((((((((((...((((((........(((((........)))))...(((((((...))))).)))))------)))...)))))).....(((.....)))))))............ ( -28.30) >DroEre_CAF1 16979 109 + 1 GUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCCGAGCGAA-----A------UAAAACACGCAAAAAACGGCGGAGAGUCGCGAAAAAGACCAGAA .....(((.(((.....(((((((((..(((((........))))).....(((((((.(((..-----.------.......)))......))))))))))).)))))...)))))).. ( -27.00) >DroYak_CAF1 30234 109 + 1 GUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCUGAGCGAA-----A------UAAAACACGCAAAAAACGGCGGAGAGUCGCGAAAAAGACCAGAA (((.....(((.((((.(((((......(((((........))))).....(((((...)))))-----.------..................))))).))))))).....)))..... ( -26.70) >consensus GUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCUGAGCGAA_____A______UAAAACACGCAAAAAACGGCGAAGAGUCGCGAAAAAGACCAGAA (((.....((((.....(((((......(((((........))))).....(((((...)))))....................))))).))))((((....))))......)))..... (-26.02 = -25.78 + -0.25)
| Location | 6,255,863 – 6,255,958 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 74.10 |
| Mean single sequence MFE | -32.63 |
| Consensus MFE | -18.24 |
| Energy contribution | -17.80 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.973437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6255863 95 + 22224390 AAACGCAAAAAACGGCGACGAGUCGCGAAAAAGACCAGCAAAAGUGUGGGAAACCU------------------GCCACGCCCACUGACAUAUGUGUGGGGUUGU--UAGUUGGG ..............((((....))))........(((((....(((.((....)).------------------..))).(((((..........))))).....--..))))). ( -28.60) >DroSec_CAF1 22481 112 + 1 ACACGCAAAAAACGGCGAAGAGUCGCGAAAAAGACCAGGAAAAGUGCGGGAAACCCAUGGAAACCCAUGGAAACGUCCCGCCCACAGACAUAUGUGUGG-GUGGU--UAGUUGGA ..........(((.((((....))))......(((((........((((((...((((((....)))))).....))))))(((((.(....).)))))-.))))--).)))... ( -37.50) >DroEre_CAF1 17048 99 + 1 ACACGCAAAAAACGGCGGAGAGUCGCGAAAAAGACCAGAAUAAGUGGGGGAAACCCGUGGAAUC----------CUCCCGCCCACUGACAUAUGUGUGG-GUGGUAC-----CAG .............((.(((...(((((.......(((.......)))((....)))))))..))----------)..((((((((..........))))-))))..)-----).. ( -31.80) >consensus ACACGCAAAAAACGGCGAAGAGUCGCGAAAAAGACCAGAAAAAGUGCGGGAAACCC_UGGAA_C__________GUCCCGCCCACUGACAUAUGUGUGG_GUGGU__UAGUUGGG .(((.........((((..(.(((........))))...........((....)).......................))))(((........)))....)))............ (-18.24 = -17.80 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:35 2006