| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 800,830 – 800,943 |
| Length | 113 |
| Max. P | 0.644075 |
| Location | 800,830 – 800,943 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.75 |
| Mean single sequence MFE | -34.35 |
| Consensus MFE | -23.94 |
| Energy contribution | -23.72 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 800830 113 + 22224390 UUGGCCAACUUCUCGCGGUCGCAGCUCAAAGUGGCGGCCAGUGCAGCUACUUCCUGGAUGUCCACCUCAAGCUGGGCACGUAGAUCCCUAAAU-----UGGGUGAAUGAUCAAGUCAG (((..((...(((((.((((((.((.....)).)))))).((.(((((......(((....))).....))))).)).)).))).(((.....-----.)))....))..)))..... ( -34.10) >DroVir_CAF1 3078 109 + 1 UUGGCCAACUUUUGGCGAUCGCAGCUUAGUGUGGCGGCCAAUGCGGCUACCUCCUGGAUGUCCACCUCCAGCUGUGCGCGCAGAUCCCUAGAAGAAAACAAAUAUGU--------AU- ........(((((((.((((((.((.(((.(((((.((....)).)))))...(((((.(....).)))))))).))..)).)))).))))))).............--------..- ( -33.30) >DroPse_CAF1 2421 95 + 1 UUGGCCAACUUCUCGCGGUCGCAGCUGAGCGUGGCGGCCAAGGCGGCCACCUCCUGGAUAUCCACCUCCAGCUGGGCACGAAGAUCCCUGGAA-----UA------------------ ....(((...(((..(((((.((((((((.(((((.((....)).))))))))..(((........))))))))))).)).)))....)))..-----..------------------ ( -36.40) >DroGri_CAF1 3346 106 + 1 UUCGCCAGCUUUUCGCGAUCGCAGCUUAAUGUGGCCGCCAAUGCAGCCACCUCCUGGAUGUCCACCUCCAGCUGUGCGCGCAGAUCCCUGUCA---AAUAAAGAAAU--------UU- ...(.(((..(((((((..((((((.....(((((.((....)).)))))....((((.(....).)))))))))))))).)))...))).).---...........--------..- ( -31.10) >DroMoj_CAF1 2406 107 + 1 UUGGCCAACUUUUCGCGAUCGCAGCUUAAUGUGGCUGCCAAUGCGGCCACCUCCUGGAUAUCCACCUCCAGCUGCGCGCGCAGAUCCCUUUAG--AAAUGAAUAUAU--------AU- ..............(((..((((((.....((((((((....))))))))....((((........))))))))))..))).......((((.--...)))).....--------..- ( -34.80) >DroPer_CAF1 2421 95 + 1 UUGGCCAACUUCUCGCGGUCGCAGCUGAGCGUGGCGGCCAAGGCGGCCACCUCCUGGAUAUCCACCUCCAGCUGGGCACGAAGAUCCCUGGAA-----UA------------------ ....(((...(((..(((((.((((((((.(((((.((....)).))))))))..(((........))))))))))).)).)))....)))..-----..------------------ ( -36.40) >consensus UUGGCCAACUUCUCGCGAUCGCAGCUUAAUGUGGCGGCCAAUGCGGCCACCUCCUGGAUAUCCACCUCCAGCUGGGCACGCAGAUCCCUGGAA_____UAAAUA_AU_________U_ ..........(((.(((..(.(((((....(((((.((....)).)))))....(((....))).....))))).)..)))))).................................. (-23.94 = -23.72 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:30 2006