Locus 2317

Sequence ID X_DroMel_CAF1
Location 6,248,927 – 6,249,044
Length 117
Max. P 0.670202
window3754

overview

Window 4

Location 6,248,927 – 6,249,044
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.97
Mean single sequence MFE -35.58
Consensus MFE -27.89
Energy contribution -28.07
Covariance contribution 0.19
Combinations/Pair 1.10
Mean z-score -1.94
Structure conservation index 0.78
SVM decision value 0.29
SVM RNA-class probability 0.670202
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6248927 117 + 22224390
AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUUAGACAGCCA---GAAGAUAGUCGAAAACUUUAUUGAUAUUCAUAUUGCAAGUGCAACUUUCU
........((((.((((...(((((.....)))))...)))).((((((((((((((.....)))).---((......))...))))))))))...))))..((((....))))...... ( -34.10)
>DroSec_CAF1 15720 117 + 1
AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUCAGACAGCCG---GCAGAUAGUCGAAAGCUUUAUUGAUAUUCAUAUUGCAGAUGCAACUUUCU
........((((.((((...(((((.....)))))...)))).((((((((((((((.....))))(---((.....)))...))))))))))...))))..((((....))))...... ( -36.80)
>DroEre_CAF1 10408 117 + 1
AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUCAGACUGCCA---GCAGAUAGUCGAAAACUUUAUUGAUAUUCAUAUUGGAAGUGGAACUUCCU
........((((.((((...(((((.....)))))...)))).((((((((((...((.(((((.(.---...).))))))).))))))))))...))))....(((((.....))))). ( -37.80)
>DroYak_CAF1 22822 120 + 1
AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUCAGAUUGGCAGCAGCAGAUAGUCGAAAACAUUAUUGAUAUUCAUAUUGCAAGUGGAACUUUCU
((((((.......((((...(((((.....)))))...))))((((((..((((.(.......).))))....((..(((((........)))))..)).))))))....)).))))... ( -33.60)
>consensus
AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUCAGACAGCCA___GCAGAUAGUCGAAAACUUUAUUGAUAUUCAUAUUGCAAGUGCAACUUUCU
........((((.((((...(((((.....)))))...)))).((((((((((...((.(((((.(.......).))))))).))))))))))...)))).................... (-27.89 = -28.07 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:23 2006