Locus 2316

Sequence ID X_DroMel_CAF1
Location 6,248,688 – 6,248,779
Length 91
Max. P 0.671441
window3753

overview

Window 3

Location 6,248,688 – 6,248,779
Length 91
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 95.70
Mean single sequence MFE -23.54
Consensus MFE -21.68
Energy contribution -21.68
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.92
SVM decision value 0.29
SVM RNA-class probability 0.671441
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6248688 91 + 22224390
CCAAGUUGAAUCAGAAAAGCCGAGCGAACUGAACUGAAACCAAAGCGACGGC---GGCGGCGAAUCGAACGCUUUUGAUUCAAUAAACGUCAAU
....((((((((((((..((((.((...................))..))))---.(((..........))))))))))))))).......... ( -23.51)
>DroSec_CAF1 15489 88 + 1
CCAAGUUGAAUCAGAAAAGCCGAGCGAACUGAACUGAAACCAAAGCGACGGC------GGCGAAUCGAACGCUUUUGAUUCAAUAAACGUCAAU
....((((((((((((..((((.((...................))..))))------.(((.......))))))))))))))).......... ( -22.81)
>DroYak_CAF1 22589 94 + 1
CCAAGUUGAAUCAGAAAAGCCGAGCGAACUGAACUGAAACCAAAGCGACGGCGGCGGCGGCGAAUCGAACGCUUUUGAUUCAAUAAACGUCAAU
....((((((((((((..((((.((...................))..)))).(((.(((....)))..))))))))))))))).......... ( -24.31)
>consensus
CCAAGUUGAAUCAGAAAAGCCGAGCGAACUGAACUGAAACCAAAGCGACGGC___GGCGGCGAAUCGAACGCUUUUGAUUCAAUAAACGUCAAU
....((((((((((((..((((.((...................))..)))).......(((.......))))))))))))))).......... (-21.68 = -21.68 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:22 2006