Locus 2312

Sequence ID X_DroMel_CAF1
Location 6,246,794 – 6,246,914
Length 120
Max. P 0.539486
window3745

overview

Window 5

Location 6,246,794 – 6,246,914
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.56
Mean single sequence MFE -33.45
Consensus MFE -20.69
Energy contribution -20.12
Covariance contribution -0.56
Combinations/Pair 1.12
Mean z-score -1.75
Structure conservation index 0.62
SVM decision value 0.01
SVM RNA-class probability 0.539486
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6246794 120 - 22224390
CGCGUGUGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCAUUGUGGCGAAAGGCGUAUCGCGAAUCGCGCGUUGCGAGUUGCCAGUUGCCAGUAGUGAA
((((.((.(((..((((.......(((((........)))))..))))..)))))))))(((((((((((..((((..((((((........))))))..))))..)))))).))))).. ( -38.50)
>DroSec_CAF1 13734 106 - 1
CGCGUGUGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCAUUGUGGCGAAAGGCGUAUCGCGAAUAGCG--------------AGUUGCGAGUUGCCAG
.(((((..(((..((((.......(((((........)))))..))))..)))..)))))....((((((...(((..((((.....)))--------------)..)))...)))))). ( -32.10)
>DroEre_CAF1 8130 93 - 1
CGCUUGCGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCAGUGUGGCGAAAGGCGUAUUGCGAGCUGCG--------------AGU-------------
.((((((((((..((((.......(((((........)))))..))))..)))(((.(((((((((.(....).))))))))))))))))--------------)))------------- ( -33.00)
>DroYak_CAF1 20781 106 - 1
CGCGUGUGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCUGUGUGGCGAAGGGCGUAUCGCGAGUUGCG--------------AGUUGCUAGUAGCGCA
.(((.(((((...))))).)))..(((((................)))))(((((((((((....)))....((((..((((.....)))--------------)..)))).)))))))) ( -30.19)
>consensus
CGCGUGUGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCAGUGUGGCGAAAGGCGUAUCGCGAAUUGCG______________AGUUGC_AGUAGCGAA
(((.((((((((((......((....)).....)))))........(((((.(((..(.....)..))).)))))...)))))....))).............................. (-20.69 = -20.12 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:16 2006