Locus 231

Sequence ID X_DroMel_CAF1
Location 799,550 – 799,641
Length 91
Max. P 0.883313
window346

overview

Window 6

Location 799,550 – 799,641
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 79.28
Mean single sequence MFE -24.35
Consensus MFE -23.79
Energy contribution -22.77
Covariance contribution -1.02
Combinations/Pair 1.26
Mean z-score -1.53
Structure conservation index 0.98
SVM decision value 0.93
SVM RNA-class probability 0.883313
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 799550 91 - 22224390
--AUGCUUUUCUCUUCCUUCAAACAGUUCCCAUUUGCUGGUGGAGUGGCUGAACCUGAUCCUCAGCUGCCAUGAACUGGUGGACACGUACUAC
--............(((......(((((((((((....))))).(..(((((.........)))))..)...))))))..))).......... ( -22.70)
>DroPse_CAF1 1568 92 - 1
CAAUCCUUUCCU-UUAAUUUUGACAGCUCCCAUCUGCUGGUGGAGUGGCUGAAUCUGAUCCUCAGCUGCAACGAGCUGAUUGAUACCUACUAC
............-..........(((((((((((....))))).(..(((((.........)))))..)...))))))............... ( -26.70)
>DroEre_CAF1 1537 91 - 1
--CGGCUUUUCUCUUCCUUCAAACAGCUCCCAUUUGCUGGUGGAGUGGCUGAACCUGAUCCUCAGCUGCCACGAGCUGGUGGACACGUACUAC
--(((((...((((.((..((((.........))))..)).)))).))))).((.((.(((((((((......)))))).))))).))..... ( -26.80)
>DroYak_CAF1 1534 90 - 1
--CGACUUCUCUCUUCCUUCA-ACAGCUCCCACUUGCUGGUGGAGUGGCUGAACUUGAUCCUCAGCUGCCAUGAACUGGUGGACACGUACUAC
--............(((....-.(((.(((((((....))))).(..(((((.........)))))..)...)).)))..))).......... ( -21.50)
>DroAna_CAF1 1559 75 - 1
------------------UCUUACAGUUCCCAUUUGCUGGUGGAGUGGCUUAACCUUAUACUGAGCUGCCACGAACUGGUGGACACAUACUAC
------------------(((..(((((((((((....))))).(((((.....(((.....)))..)))))))))))..))).......... ( -21.70)
>DroPer_CAF1 1568 92 - 1
CAAUCCUUUCCU-UUAAUUUUGACAGCUCCCAUCUGCUGGUGGAGUGGCUGAAUCUGAUCCUCAGCUGCAACGAGCUGAUUGAUACCUACUAC
............-..........(((((((((((....))))).(..(((((.........)))))..)...))))))............... ( -26.70)
>consensus
__AUCCUUUUCU_UUCCUUCAAACAGCUCCCAUUUGCUGGUGGAGUGGCUGAACCUGAUCCUCAGCUGCCACGAACUGGUGGACACGUACUAC
..................((...(((((((((((....))))).(..(((((.........)))))..)...))))))...)).......... (-23.79 = -22.77 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:29 2006