Locus 2308

Sequence ID X_DroMel_CAF1
Location 6,237,262 – 6,237,369
Length 107
Max. P 0.573291
window3739

overview

Window 9

Location 6,237,262 – 6,237,369
Length 107
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 91.24
Mean single sequence MFE -34.33
Consensus MFE -26.30
Energy contribution -26.93
Covariance contribution 0.63
Combinations/Pair 1.08
Mean z-score -1.64
Structure conservation index 0.77
SVM decision value 0.08
SVM RNA-class probability 0.573291
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6237262 107 - 22224390
CAGUUGAACGGCCUGGACACACAGAGCCUGCCAAAGUGGCAGGCAGCAGAGAAAAUGCGGCGACCGUUCUGGCAAAAAGGAAAAUCGCACUGCGCGAAAAUCUUUUG
..(((((((((.(((......))).(((((((.....))))))).(((.......))).....)))))).)))..((((((...((((.....))))...)))))). ( -38.60)
>DroSec_CAF1 10226 106 - 1
CAGUUGAACGGCCUGGACACACAGAGCCUGCCAAAGUGGCA-GCAGCAGAGAAAAUGCGGAGACCGUUGUGGCAAAAAGGAAAGCCGCACUGCGCGAAAAUUUGUUG
......(((((((((......))).)))((((.....))))-((.((((....((((.(....)))))(((((..........))))).))))))........))). ( -34.00)
>DroSim_CAF1 13076 106 - 1
CAGUUGAACGGCCUGGACACACAGAGCCUGCCAAAGUGGCA-GCAGCAGAGAAAAUGCGGAGACCGUUGUGGCGAAAAGGAAAACCGCACUGCGCGAAAAUUGGUUG
(((((....((((((......))).)))((((.....))))-((.((((....((((.(....)))))((((............)))).))))))...))))).... ( -31.40)
>DroEre_CAF1 4984 106 - 1
CAGUUGAACGGCCUGGACACACAGCGCCUGCCAAAGUGGCA-GCAGGAGAGAAAAUGCGGAGACCGUUGUGGCACACAGAACAGCCACACUGCGCGAAAAUGCGUCG
.........((((((......))).)))((((.....))))-((((.......((((.(....)))))(((((..........))))).))))((......)).... ( -33.30)
>consensus
CAGUUGAACGGCCUGGACACACAGAGCCUGCCAAAGUGGCA_GCAGCAGAGAAAAUGCGGAGACCGUUGUGGCAAAAAGGAAAACCGCACUGCGCGAAAAUUUGUUG
.........((((((......))).)))((((.....)))).((.((((....((((.(....)))))(((((..........))))).))))))............ (-26.30 = -26.93 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:10 2006