| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,235,375 – 6,235,486 |
| Length | 111 |
| Max. P | 0.520133 |
| Location | 6,235,375 – 6,235,486 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.13 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -12.70 |
| Energy contribution | -12.45 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.50 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6235375 111 + 22224390 CUUUAUUUUUUUACAUCACUGUUGGUCGUCCUGCUUCCAUGUGCUAAACAUUGCCAAUGCCAUUGUUCUUGUUCU---UCCUCGAAGGACCUGCAAGGACUCCGC------AGCCCGCAG ..................((((.(((......((....((((.....)))).))...(((....((((((((...---(((.....)))...))))))))...))------)))).)))) ( -25.10) >DroSec_CAF1 8429 102 + 1 CUUUAUUUUUUUACAUCACUGCUGG---UCCUGCUCCCAUGUGCUAAACAUUGCCAAUGCCAUUGUUCUUGUUCU---UCCUCGAAGGACCUGCAAGGACUCCGC------ACC------ ...................((((((---(...((....((((.....)))).))....))))..((((((((...---(((.....)))...))))))))...))------)..------ ( -21.40) >DroEre_CAF1 3001 109 + 1 CUUU-----UUUACUUCACUGCUGG---UCCUGCUCCCAUGUGCUAAACAUGGCCAAUGCCAUUGUUCUUGUUCU---UCUUCGAAGGACCUGCAAGGACUCCGGCACAGCAGCCCGCAC ....-----..........(((.((---..(((((.((((((.....))))))....((((...((((((((...---(((.....)))...))))))))...)))).))))))).))). ( -35.20) >DroYak_CAF1 16008 103 + 1 CUCU-----UUUUUUUC-----------UUCUACUU-CAUGUGCUAAACAUUGCCAAUGCCAUUGUUCUUGUUCUUCUUCUUCGAAGGACCUGCAAGGACGCUGCCACAGCACCACACAC ....-----........-----------........-..((((.....................((((((((..((((((...))))))...))))))))((((...))))....)))). ( -20.70) >consensus CUUU_____UUUACAUCACUGCUGG___UCCUGCUCCCAUGUGCUAAACAUUGCCAAUGCCAUUGUUCUUGUUCU___UCCUCGAAGGACCUGCAAGGACUCCGC______ACCCCGCAC .......................................((.((........))))........((((((((......(((.....)))...)))))))).................... (-12.70 = -12.45 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:06 2006