| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,235,025 – 6,235,115 |
| Length | 90 |
| Max. P | 0.802733 |
| Location | 6,235,025 – 6,235,115 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 88.68 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -16.38 |
| Energy contribution | -16.17 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6235025 90 - 22224390 AAAUCCAAAUCCAACUUCAAUUUAAGCUUUUGUCAGCGCAGGGAAGCAAAAACGCGGGGGCGUGGACUGGAAACUAGAAAAAAAAAAACC ...((((..(((.............((((((.(......).))))))....((((....))))))).))))................... ( -17.10) >DroSec_CAF1 8097 85 - 1 AAAUCCAAAUCCAACUUCAAUUUAAGCUUUUGUCGGCGCAAGGAAGCAAAAACGCGGCGGCGUGGACUGGAAACUUAAAAAAAAA----- ....................((((((.(((((((.((((...(..((......))..).)))).))).)))).))))))......----- ( -18.20) >DroEre_CAF1 2686 85 - 1 AAAUCCAAAUCCAACUUCAAUUUGAGCUUUUGUCAGCGCAAAGAAGCAAAAUCGCGGGGGCGUAGACUGAAAACUUAAAAAAAAA----- ....................((((((.(((((((.((((......((......))....)))).))).)))).))))))......----- ( -16.40) >consensus AAAUCCAAAUCCAACUUCAAUUUAAGCUUUUGUCAGCGCAAGGAAGCAAAAACGCGGGGGCGUGGACUGGAAACUUAAAAAAAAA_____ ....................((((((.(((((((.((((......((......))....)))).))).)))).))))))........... (-16.38 = -16.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:04 2006