Locus 2303

Sequence ID X_DroMel_CAF1
Location 6,234,321 – 6,234,433
Length 112
Max. P 0.982663
window3732

overview

Window 2

Location 6,234,321 – 6,234,433
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.43
Mean single sequence MFE -36.64
Consensus MFE -19.28
Energy contribution -20.16
Covariance contribution 0.88
Combinations/Pair 1.18
Mean z-score -2.70
Structure conservation index 0.53
SVM decision value 1.92
SVM RNA-class probability 0.982663
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6234321 112 - 22224390
A---CCAGAU----GUACUGGCAAAGGACGAGGAACGGCGGCGAAAACGAAUGUAAUUGCUGCAAAUGAAUAAAUGAGCCGAGGCAGGCGAAAGCCACCGCCGGUUGCGCCUUUU-GGGA
.---((((..----...))))((((((.((.......(((((((..((....))..))))))).............(((((.((..(((....))).))..))))).)).)))))-)... ( -36.60)
>DroSec_CAF1 7313 110 - 1
----CCAGAU----GUACUGGGAAAGGACGAGGAACGGCGGCGAAAACGAAUGUAAUUGCAGCAAAUGAAUAAAUGAGGCGAGGCAGGCGAAAGCCACCGCUGGUUGCGCCUUUC--GGA
----((((..----...))))((((((.((.....((((((................(((.((..((......))...))...)))(((....))).))))))....))))))))--... ( -39.20)
>DroSim_CAF1 10596 110 - 1
----CCAGAU----GUACUGGGAAAGGACGAGGAACGGCGGCGAAAACGAAUGUAAUUGCAGCAAAUGAAUAAAUGAGGCGAGGCAGGCGAAAGCCACCGCUGGUUGCGCCUUUC--GGA
----((((..----...))))((((((.((.....((((((................(((.((..((......))...))...)))(((....))).))))))....))))))))--... ( -39.20)
>DroEre_CAF1 1950 100 - 1
GCAACAGCAAGGAAGG-----------ACGAGGAAUGGCGGCGAAAACGAAUGUAAUUGCAGCAAAUGAAUAAAUGAGG---------CGAAAGCCACCGCUGGCCGCGCCUUUCUCCAU
((....)).(((((((-----------.((.((...(((((..........(((....)))................((---------(....))).)))))..)).))))))))).... ( -31.40)
>DroYak_CAF1 14823 113 - 1
----CAACAAGGAAGGAC-GAGGAGGGACGAGAAAUGGCGGCGAAAGCGAGUGUAAUUGCAGCAAAUGAAUAAAUGAGGCGAGGCAGGCGAAAGCCACCGCUGGUUGCUCCUUGC--GGA
----...........(.(-((((((.(((.((...((((.((....))(..(((..((((..((..........))..)))).)))..)....))))...)).))).))))))))--... ( -36.80)
>consensus
____CCAGAU____GUACUGGGAAAGGACGAGGAACGGCGGCGAAAACGAAUGUAAUUGCAGCAAAUGAAUAAAUGAGGCGAGGCAGGCGAAAGCCACCGCUGGUUGCGCCUUUC__GGA
.............................((((..((((((((..............(((.((..((......))...))...)))(((....)))..)))).))))..))))....... (-19.28 = -20.16 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:03 2006