Locus 2301

Sequence ID X_DroMel_CAF1
Location 6,231,639 – 6,231,748
Length 109
Max. P 0.701471
window3728

overview

Window 8

Location 6,231,639 – 6,231,748
Length 109
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.37
Mean single sequence MFE -36.00
Consensus MFE -24.74
Energy contribution -25.61
Covariance contribution 0.88
Combinations/Pair 1.11
Mean z-score -1.80
Structure conservation index 0.69
SVM decision value 0.35
SVM RNA-class probability 0.701471
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6231639 109 + 22224390
----------ACCGCAUUUUAUCGCAGCCUCUCCGGCUGGCUGUUAUGACACUGCAAAGCGACAUCCACCUGUUGGUCAGCGCGAAAAACUGCGUCCGUAAUGCCAA-ACGGAAAUGGAA
----------.(((((.(((.((((((((.....)))).((((..(((.(.((....)).).)))..(((....))))))))))).))).))).(((((........-)))))...)).. ( -32.00)
>DroSec_CAF1 4695 118 + 1
CCGCCUUUUCCACGCAUUUCAUCGCAGCCUCA-CGGCUGGCUGUUAUGACACUGCAACGCGACAUCCACCUGUUGGUCAGUCCGGAAAACUGCGUCCGUAAUGCCAA-CCGGAAACGGAA
.(((.((((((..(((..((((.((((((...-.....)))))).))))...)))...(.(((..(((.....)))...))))))))))..)))(((((....((..-..))..))))). ( -38.90)
>DroSim_CAF1 6766 118 + 1
CCGCCUUUUCCACGCAUUUCAUCGCAGCCUCA-CGGCUGGCUGUUAUGACACUGCAACGCGACAUCCACCUGUUGGUCAGUCCGGAAAACUGCGUCCGUAAUGCCAA-CCGGAAACGGAA
.(((.((((((..(((..((((.((((((...-.....)))))).))))...)))...(.(((..(((.....)))...))))))))))..)))(((((....((..-..))..))))). ( -38.90)
>DroYak_CAF1 12191 109 + 1
----------CCCCAUUUUCAUCGCAUCCUCU-CGGCUGGUUGUUAUGACACUGCAACCCGACAUCCACCUGUUGGUCAGCCCGGAAAACUGCGUCUGUAAUGCCAAACCGGAAACGGGA
----------...((((.....((((...(((-.((((((((((.........)))))((((((......)))))).))))).)))....)))).....)))).....(((....))).. ( -34.20)
>consensus
__________CACGCAUUUCAUCGCAGCCUCA_CGGCUGGCUGUUAUGACACUGCAACGCGACAUCCACCUGUUGGUCAGCCCGGAAAACUGCGUCCGUAAUGCCAA_CCGGAAACGGAA
.............(((((....(((((.......((((((((((.........)))...(((((......)))))))))))).......))))).....)))))....(((....))).. (-24.74 = -25.61 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:00 2006