Locus 230

Sequence ID X_DroMel_CAF1
Location 796,423 – 796,522
Length 99
Max. P 0.898278
window345

overview

Window 5

Location 796,423 – 796,522
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 72.51
Mean single sequence MFE -32.40
Consensus MFE -16.64
Energy contribution -17.92
Covariance contribution 1.28
Combinations/Pair 1.24
Mean z-score -1.88
Structure conservation index 0.51
SVM decision value 1.00
SVM RNA-class probability 0.898278
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 796423 99 - 22224390
C-ACUG------CAGGGUCUU---AACUAUUUCAGGACCCACCGCCGCACACUGGAAACAGCAUUUUCCUAAUGGCACCUAGUCUGGUGCCCGAGUCGGCGGAAAUCGA
.-....------..(((((((---.........))))))).((((((.((.(((....)))............((((((......))))))...))))))))....... ( -40.80)
>DroSec_CAF1 3215 99 - 1
U-ACUG------CAGGGCCUU---AACUAUUUCAGGACCCACCGAUGCUCACUGGAAACAGCAUUUUCUUAAUGGCACCUAGUCUGGUGCCCCAGUCGGUGGAGAACGA
.-.((.------(.((((((.---((....)).))).)))((((((.....(((....)))............((((((......))))))...))))))).))..... ( -33.80)
>DroSim_CAF1 3226 99 - 1
U-ACUG------CAGGGCCCU---AACUAUUUCAGGACCCACCACCGCUCACUGGAAACAGCAUUUUCUUAAUGGCACCUAGUCUGGUGCCCCAGUCGGCGGAGAACGA
.-....------..(((.(((---.........))).)))....(((((.(((((.......(((.....)))((((((......))))))))))).)))))....... ( -34.40)
>DroEre_CAF1 131 99 - 1
C-ACUG------CAGGGCCUU---CACUAUUCUAGGAUCCACCGCCGAACUCCGGAAACAGCGUGUUUCUAAUGGCGCCUGGCCUGGUGCCCCAAUUAGCGGAAAAUGA
.-....------..((((((.---.........))).))).((((..(.....((((((.....))))))...((((((......))))))....)..))))....... ( -29.20)
>DroYak_CAF1 2729 105 - 1
U-ACUGGUACUACAGGGCCUU---ACCUAUUUUAGGACCCACCGCCGAACUCCGGGAACAGCGUGUUUCUAAUGGCACCAGGUCUGGUGCCCCAGGCAGCGGAAAAUGA
.-.(((((......((((((.---.........))).)))...((((......((((((.....))))))..))))))))).((((.((((...)))).))))...... ( -34.30)
>DroMoj_CAF1 140 94 - 1
UAAUUG------CAAUUUCUCUAUAC---UUGCAGGAUCCAAAGACCAACUCAGAGAACAGUGUAUAUCUUAUGGCACCGAGCCUAGUGCCGGUG------CAAAUGGA
....((------((..((((((....---..(..((.((....))))..)..))))))...))))..(((....((((((.((.....)))))))------)....))) ( -21.90)
>consensus
U_ACUG______CAGGGCCUU___AACUAUUUCAGGACCCACCGCCGAACACUGGAAACAGCAUUUUCCUAAUGGCACCUAGUCUGGUGCCCCAGUCGGCGGAAAACGA
..............((((((.............))).))).((((........(....)..............((((((......)))))).......))))....... (-16.64 = -17.92 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:28 2006