Locus 2297

Sequence ID X_DroMel_CAF1
Location 6,227,388 – 6,227,499
Length 111
Max. P 0.827547
window3717

overview

Window 7

Location 6,227,388 – 6,227,499
Length 111
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.73
Mean single sequence MFE -31.95
Consensus MFE -22.13
Energy contribution -23.44
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -3.18
Structure conservation index 0.69
SVM decision value 0.70
SVM RNA-class probability 0.827547
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6227388 111 + 22224390
GGGCGGGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGGCGG---------AGGGCCAAAAGGGAAAAUGCUGAACGGUGGCCAAAAAAA
.(((.(.(..((((.((.((..(((((((((((((((....))))))))))))))).)).)).....(((..---------...))).............))))..).).)))....... ( -32.40)
>DroSec_CAF1 1688 109 + 1
GGGCGAGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGGCGG-----------GGCCAAAAGGGAAAAUGCUGAACGGUGCCAAAAAAAA
.((((.((..((((.((.((..(((((((((((((((....))))))))))))))).)).)).....(((..-----------.))).............))))))..))))........ ( -30.70)
>DroSim_CAF1 3762 109 + 1
GGGCGGGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGGCGG-----------GGCCAAAAGGGAAAAUGCUGAACGGUGGCCAAAAAAA
.(((.(.(..((((.((.((..(((((((((((((((....))))))))))))))).)).)).....(((..-----------.))).............))))..).).)))....... ( -30.70)
>DroYak_CAF1 9365 120 + 1
GGACGGGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGACGGGCACGGAAAAGGAGCCAAAGGGAAAAUCCCGAAUGGUGGCCAAAAAAU
(..((.(....)...((.((..(((((((((((((((....))))))))))))))).)).))...))..)((.(((((........))...(((.....))).....))).))....... ( -34.00)
>consensus
GGGCGGGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGGCGG___________GGCCAAAAGGGAAAAUGCUGAACGGUGGCCAAAAAAA
.(((.(.(..((((.((.((..(((((((((((((((....))))))))))))))).)).)).....(((..............))).............))))..).).)))....... (-22.13 = -23.44 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:50 2006