| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,219,282 – 6,219,383 |
| Length | 101 |
| Max. P | 0.707449 |
| Location | 6,219,282 – 6,219,383 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 79.67 |
| Mean single sequence MFE | -17.67 |
| Consensus MFE | -14.28 |
| Energy contribution | -14.50 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6219282 101 + 22224390 UGUUCUCCCAGCUGCUUUUUGUGCUCUUUUGGCCAUCUUGCCAGUGCUUUCCAUUCAGCCAUCCAGCCAUCCUGCCCCCCCAAUGCUGGC---CCCAAUCCGCU .......(((((.((....((.(((....((((......))))(.(((........))))....)))))....)).........))))).---........... ( -17.10) >DroSec_CAF1 4189 92 + 1 UGUUCUCCCAGCAGCUUUUUGUGCUCUUUUGGCCAUCUUGCCACUGCUUUCCA--------UCCAGCCAUCCUGCC-CCCCAAUGCUGGC---CCCAAUCCGCU .......((((((.......(.((.....((((......))))..(((.....--------...)))......)))-......)))))).---........... ( -15.52) >DroEre_CAF1 4448 85 + 1 UGUUCUGCCAGCAGCUUUCUGUGCUCUUUUGGCCAUCUUGCCAAUGCUUCCCA--------A--------CCUGCC--CCCAGUGCUGGCCAC-CCAAUCCACU ......(((((((.........((....(((((......))))).))......--------.--------.(((..--..))))))))))...-.......... ( -20.40) >consensus UGUUCUCCCAGCAGCUUUUUGUGCUCUUUUGGCCAUCUUGCCAAUGCUUUCCA________UCCAGCCAUCCUGCC_CCCCAAUGCUGGC___CCCAAUCCGCU .......(((((.((.....))((....(((((......))))).)).....................................)))))............... (-14.28 = -14.50 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:48 2006