Locus 2293

Sequence ID X_DroMel_CAF1
Location 6,212,074 – 6,212,164
Length 90
Max. P 0.707747
window3712

overview

Window 2

Location 6,212,074 – 6,212,164
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.36
Mean single sequence MFE -26.32
Consensus MFE -18.79
Energy contribution -18.93
Covariance contribution 0.14
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.71
SVM decision value 0.37
SVM RNA-class probability 0.707747
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6212074 90 + 22224390
CAUAAACC------GGAUCCC---GAAAUGGCGGCCUACUUGAACCGCACCAUCUCGAUGGUGACCGGGCAAACGGGCCCCGCCGACGACGACCGUCAC
.......(------((...))---)....((((((((..(((..(((((((((....))))))..))).)))..)))))..)))((((.....)))).. ( -32.00)
>DroVir_CAF1 3633 89 + 1
----AAAC------GCAACCCAAACAAAUGGCGGCCUACUUGAAUCGCACCAUUUCACUGGUGACUGGCCAAACGGGCCCCUCCGGCAACGAUAAACAC
----....------...............((.(((((..(((.....(((((......)))))......)))..)))))))..((....))........ ( -22.20)
>DroEre_CAF1 6269 90 + 1
UAUUAACC------GGAUCCC---GAAAUGGCGGCCUACUUGAACCGCACCAUCUCGCUGGUGACCGGGCAAACGGGCCCCGCCGACGACGACCAUCAC
........------((.((.(---(...(((((((((..(((..((((((((......)))))..))).)))..)))))..)))).))..))))..... ( -26.50)
>DroYak_CAF1 6245 90 + 1
UAUAAACC------GGAUCCC---GAAAUGGCGGCCUACUUGAACCGCACCAUCUCGCUGGUGACCGGGCAAACGGGCCCCGCCGACGACGACCGUCAC
.......(------((...))---)....((((((((..(((..((((((((......)))))..))).)))..)))))..)))((((.....)))).. ( -30.20)
>DroMoj_CAF1 3727 91 + 1
--UUAAAC------GCAAACCAAACAAAUGGCGGCCUACUUGAAUCGCACCAUUUCACUGGUGACCGGCCAAACGGGCCCAUCCGCCAACGACAAAAAC
--......------..............((((((.............(((((......)))))...((((.....))))...))))))........... ( -23.80)
>DroAna_CAF1 3921 96 + 1
UAUAAACCGAAACGGAAUUAC---GAAAUGGCGGCCUACUUGAACCGCACCAUAUCGCUGGUAACCGGGCAAACGGCCCCCAACGACAACGACGGCAAC
......(((...((......)---)...(((.((((...(((..(((.((((......))))...))).)))..)))).)))..........))).... ( -23.20)
>consensus
UAUAAACC______GGAUCCC___GAAAUGGCGGCCUACUUGAACCGCACCAUCUCGCUGGUGACCGGGCAAACGGGCCCCGCCGACAACGACCAUCAC
.............................((.(((((..(((..((((((((......)))))..))).)))..))))))).................. (-18.79 = -18.93 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:46 2006