Locus 2292

Sequence ID	X_DroMel_CAF1
Location	6,203,411 – 6,203,505
Length	94
Max. P	0.996090

overview

Window 0

Location	6,203,411 – 6,203,505
Length	94
Sequences	3
Columns	110
Reading direction	forward
Mean pairwise identity	80.37
Mean single sequence MFE	-27.53
Consensus MFE	-20.23
Energy contribution	-20.23
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.51
Structure conservation index	0.73
SVM decision value	0.13
SVM RNA-class probability	0.596700
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6203411 94 + 22224390
GUAAACCUG---GAAU-------UGAAUCAGGUG------UGUUGUGGGCGGUUCAUUGAACCGGCGGUUAAGUUGAAUUCAAUUAAAUGCCGGCAAACAUUUGUUUGUG
....(((((---(...-------....)))))).------.......(.((((((...)))))).)(((..(((((....)))))....))).((((((....)))))). ( -25.90)
>DroEre_CAF1 9931 104 + 1
GUAAACCUGGGGGAAUCGUUGUGUGAUUCAGGUU------UGUUGUGGGCGGUUCAGUGAACCGGCAGUUAAGUUGAAUUCAAUUAAAUGCCGGCAAACAUUUGUUUGUC
.(((((((....((((((.....)))))))))))------))........(((((...)))))((((....(((((....)))))...))))(((((((....))))))) ( -30.60)
>DroYak_CAF1 9983 101 + 1
-UAAAU-----GCA---AUUGUGUGAGUCAGGUGAGUUAGUGUUGGGGGCGGUUCAGUGAACCGGCUGUUAAGUUGAAUUCAAUUAAAUGCCGGCAAACAUUUGUUUGUG
-.....-----(((---(.(((.(((.((....)).))).((((((((.((((((...)))))).))(((.(((((....))))).))).)))))).))).))))..... ( -26.10)
>consensus
GUAAACCUG__GGAAU__UUGUGUGAAUCAGGUG______UGUUGUGGGCGGUUCAGUGAACCGGCAGUUAAGUUGAAUUCAAUUAAAUGCCGGCAAACAUUUGUUUGUG
..............................(((..............(.((((((...)))))).).(((.(((((....))))).)))))).((((((....)))))). (-20.23 = -20.23 +  -0.00)

alignment

secondary structure

dotplot

Window 1

Location	6,203,411 – 6,203,505
Length	94
Sequences	3
Columns	110
Reading direction	reverse
Mean pairwise identity	80.37
Mean single sequence MFE	-20.10
Consensus MFE	-14.77
Energy contribution	-14.77
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-2.99
Structure conservation index	0.73
SVM decision value	2.65
SVM RNA-class probability	0.996090
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6203411 94 - 22224390
CACAAACAAAUGUUUGCCGGCAUUUAAUUGAAUUCAACUUAACCGCCGGUUCAAUGAACCGCCCACAACA------CACCUGAUUCA-------AUUC---CAGGUUUAC
..(((((....)))))..(((..(((((((....))).))))..)))(((((...)))))..........------.(((((.....-------....---))))).... ( -19.50)
>DroEre_CAF1 9931 104 - 1
GACAAACAAAUGUUUGCCGGCAUUUAAUUGAAUUCAACUUAACUGCCGGUUCACUGAACCGCCCACAACA------AACCUGAAUCACACAACGAUUCCCCCAGGUUUAC
(.(((((....))))).)((((.(((((((....))).)))).))))(((((...))))).........(------((((((((((.......)))))....)))))).. ( -25.90)
>DroYak_CAF1 9983 101 - 1
CACAAACAAAUGUUUGCCGGCAUUUAAUUGAAUUCAACUUAACAGCCGGUUCACUGAACCGCCCCCAACACUAACUCACCUGACUCACACAAU---UGC-----AUUUA-
.......(((((((((..(((..(((((((....))).))))..)))(((((...))))).............................))).---.))-----)))).- ( -14.90)
>consensus
CACAAACAAAUGUUUGCCGGCAUUUAAUUGAAUUCAACUUAACAGCCGGUUCACUGAACCGCCCACAACA______CACCUGAAUCACACAA__AUUCC__CAGGUUUAC
..(((((....)))))..(((..(((((((....))).))))..)))(((((...))))).................................................. (-14.77 = -14.77 +   0.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:45 2006