Locus 2291

Sequence ID X_DroMel_CAF1
Location 6,194,633 – 6,194,736
Length 103
Max. P 0.506855
window3709

overview

Window 9

Location 6,194,633 – 6,194,736
Length 103
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 89.36
Mean single sequence MFE -35.50
Consensus MFE -25.20
Energy contribution -24.96
Covariance contribution -0.24
Combinations/Pair 1.10
Mean z-score -1.73
Structure conservation index 0.71
SVM decision value -0.05
SVM RNA-class probability 0.506855
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6194633 103 - 22224390
AAACCGGGGGCGUUGCCGUCCAGCUGCAA-UAUAGCCCACGGGCAGUGCUCAAAAAUGGCCAAA-UUAGAUGG--AUUUGGUGGCACCAACAGCGGGGAAUCCCAGU
.....((((((...))).(((.((((...-....(((....))).(((((........((((((-((.....)--))))))))))))...))))..)))..)))... ( -35.90)
>DroSec_CAF1 1964 101 - 1
AA--CGGGGGCGUUGCCGUCCAGCUGCAA-AACAGCCCAUGGGCAGUGCUCAAAAAUGGCCAAA-UUAGAUGG--AUUUGGUGGCCCCAACAGCGGGGAAUCCCAGU
..--.((((((((((((.....((((...-..)))).....)))))))))).....(.((((((-((.....)--))))))).)((((......))))....))... ( -35.80)
>DroSim_CAF1 2333 102 - 1
AA--CGGGGGCGUUGCCGUCCAGCUGCAAAAACAGCCCACGGGCAGUGCUCAAAAAUGGCCAAA-UUAGAUGG--AUUUGGUGGCCCCAACAGCGGGGAAUCCCAUU
..--.((((((((((((((...((((......))))..)).)))))))))).....(.((((((-((.....)--))))))).)((((......))))....))... ( -36.30)
>DroEre_CAF1 1966 102 - 1
AA--CGGGGGCGUUGCCGUCCAGCUGCAA-AACAGGCCACGAGCAGUGCUCAAAAAUGGCCAAAAAAUCAUGG--AUUUAGUGGUCCAAGCAGCGGGGAAUCCCAGU
..--.((((((...))).(((.(((((..-....(((((.((((...)))).....))))).........(((--(((....)))))).)))))..)))..)))... ( -39.20)
>DroYak_CAF1 1967 101 - 1
AU--CGGGGGCGUUGCCGUCCAACUGCAA--ACAGCCCAUGAGCAGUGCUCAAAAAUGGCCAAA-UAUGAUGGAGAUUUGGUGGUCCAA-CAGCGGGGAAUCCCAGU
..--.((((((.((((.(.....).))))--...)))).(((((...)))))...((.((((((-(.........))))))).))))..-....(((....)))... ( -30.30)
>consensus
AA__CGGGGGCGUUGCCGUCCAGCUGCAA_AACAGCCCACGGGCAGUGCUCAAAAAUGGCCAAA_UUAGAUGG__AUUUGGUGGCCCCAACAGCGGGGAAUCCCAGU
.....((((...((.((((...((((......))))((((((((...))))..((((..(((........)))..)))).))))........)))).)).))))... (-25.20 = -24.96 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:43 2006