| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 792,701 – 792,803 |
| Length | 102 |
| Max. P | 0.999955 |
| Location | 792,701 – 792,803 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 67.53 |
| Mean single sequence MFE | -41.43 |
| Consensus MFE | -28.61 |
| Energy contribution | -28.51 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.69 |
| SVM decision value | 4.84 |
| SVM RNA-class probability | 0.999955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 792701 102 - 22224390 GGGAACCUGUGCACACAGCUGCCGAAUGGUGUCGUGCUCGGGCGAAUA-CCCUUUGAGCGCCUCCUGGCGCUCCGAGGAGUGACUACUUUGGUCAAGAUGCUC .....((((.(((((((.(........).))).)))).))))......-.((((.(((((((....))))))).))))..(((((.....)))))........ ( -40.30) >DroSec_CAF1 4872 78 - 1 GGAAACCUGUGCACACUGCUCCCUAUUGGUGUCGUGCUCGGGCAAAUC-CCCUUUGAGCGCCUCCUGGCGCUCCGAGGA------------------------ (((..((((.((((...((.((.....)).)).)))).))))....))-)((((.(((((((....))))))).)))).------------------------ ( -35.90) >DroEre_CAF1 1389 103 - 1 GGGAACCCGGGCGCACAGCUACCAGAUGCGGUCGCGUCAGGGGAAGUCCCACUUUGGGCGCCUCCUGGCGCUGCGAGGAGUAGCUACUGUGCUCAAGAUGCUC ((....))(((((((.((((((..(((((....)))))..(((....))).(((((((((((....)))))).))))).))))))..)))))))......... ( -48.10) >consensus GGGAACCUGUGCACACAGCUACCAAAUGGUGUCGUGCUCGGGCAAAUC_CCCUUUGAGCGCCUCCUGGCGCUCCGAGGAGU__CUACU_UG_UCAAGAUGCUC .....((((.((((((..............)).)))).))))........((((.(((((((....))))))).))))......................... (-28.61 = -28.51 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:27 2006