Locus 2289

Sequence ID X_DroMel_CAF1
Location 6,190,359 – 6,190,454
Length 95
Max. P 0.866523
window3707

overview

Window 7

Location 6,190,359 – 6,190,454
Length 95
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 64.94
Mean single sequence MFE -21.70
Consensus MFE -9.60
Energy contribution -10.54
Covariance contribution 0.94
Combinations/Pair 1.17
Mean z-score -2.04
Structure conservation index 0.44
SVM decision value 0.85
SVM RNA-class probability 0.866523
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6190359 95 - 22224390
---------AAAUGCAAAGUAGCCAAAUGCAAGUAGUAGUUACUGGAAAAUUCCGAACAAUUGGA------------UAAAUGAAAUGCGAUAGUAUUUUGGUGGCAUUAAUG---AUA
---------.(((((..((((((....(((.....))))))))).......(((((....)))))------------.....(((((((....)))))))....)))))....---... ( -17.30)
>DroSec_CAF1 16695 106 - 1
CUUUUUCUUAAAUGAAAAGCAGCCAAAUGCUAGUAGUAGUUACUGGAAAAACCCUGAAAUUUGGU------------UAAAUGAAAUGCGAUAGUAUUUUGGUGGCAUUAAUG-UAGUA
..(((((......)))))((((((((((.(((((((...)))))))............)))))))------------)....(((((((....)))))))....)).......-..... ( -20.02)
>DroEre_CAF1 16993 98 - 1
------AUUAAAUGCAAAGCAGCAAAAUGCUAGCAGUAAUUUCUGGAAAAUUCCAGACAUUUGGAAAUGCUGAAAUUAAAAUGAAAUGCCAUAGUAUUUUGGUG---------------
------.............((.(((((((((((((......((((((....))))))(((((...(((......))).)))))...)))..)))))))))).))--------------- ( -23.10)
>DroYak_CAF1 18626 99 - 1
--------------------GGCUAAGUGCUAGCAGAAAUUUCUGGAAAAUUCCGGACAUUUAGAAAUGCUGAAACUAAAAUGAAAUUAUAUAGUAUUUUGGUGGCAUUAAUGGCAGUA
--------------------.((((((((((((((.((((.((((((....)))))).)))).....))))...(((((((((...........)))))))))))))))..)))).... ( -26.40)
>consensus
_________AAAUGCAAAGCAGCCAAAUGCUAGCAGUAAUUACUGGAAAAUUCCGGACAUUUGGA____________AAAAUGAAAUGCGAUAGUAUUUUGGUGGCAUUAAUG___GUA
.....................(((((((((((...(((....((((......)))).(((((................)))))...)))..))))).))))))................ ( -9.60 = -10.54 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:42 2006