| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,189,434 – 6,189,539 |
| Length | 105 |
| Max. P | 0.998987 |
| Location | 6,189,434 – 6,189,539 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 88.38 |
| Mean single sequence MFE | -23.44 |
| Consensus MFE | -19.14 |
| Energy contribution | -19.94 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.33 |
| Structure conservation index | 0.82 |
| SVM decision value | 3.31 |
| SVM RNA-class probability | 0.998987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6189434 105 + 22224390 AAAUUUUCCAAGGCAUCGACGUUAUUCGAGCCAGUGCAACCACUGUGCACUUGUUCGCUGAUCCACAUUAGCCAUUAGCAUUAACGAAAAUCACAUAAAACCAUA ..((((((...(((.((((......)))))))((((((.......))))))((((.((((((....))))))....)))).....)))))).............. ( -22.20) >DroSec_CAF1 15774 105 + 1 AAAUUUUCCAAGACAUCAACGAUAUUCGAGCAAGUGCAACCACUGUGCACUUGUUCGCUGAUCCACAUUAACCAUUAGCAUUAACGAAAAUCACAUAAAACCAUA ....................(((.((((((((((((((.......)))))))))))((((((...........))))))......))).)))............. ( -25.70) >DroSim_CAF1 15701 105 + 1 AAAUUUUCCAAGACAGCAACGAUAUUCGAGCAAGUGCAACCACUGUGCACUUGUUCGCUGAUCCACAUUAGCCAUUAGCAUUAACGAAAAUCACAUAAAACCAUA ....................(((.((((((((((((((.......)))))))))))((((((....)))))).............))).)))............. ( -25.80) >DroEre_CAF1 16032 105 + 1 ACACUUUCAAACACAGAAACACUAUACGAGCAAGUGCACCCACUGUGCACCUGUUCGCUGAUCCACAUUAGCCAUUAGCAUUAACGGAAAUCACAUAAACCCAUA ....((((...................(((((.((((((.....)))))).)))))((((((....)))))).............))))................ ( -21.70) >DroYak_CAF1 17642 105 + 1 ACAUUUUUCACAACAGGAGCGCUAUUUGAGCAAAUGCACCCACUGUGCACCUGUUCACUGAUCCACAUUAGCCAUUAGCAUUAACGGAAAUCACAUAAGCCCAUG ...............((.((((((..((((((..(((((.....)))))..))))))(((((....)))))....))))......(.......)....))))... ( -21.80) >consensus AAAUUUUCCAAGACAGCAACGAUAUUCGAGCAAGUGCAACCACUGUGCACUUGUUCGCUGAUCCACAUUAGCCAUUAGCAUUAACGAAAAUCACAUAAAACCAUA ..((((((...................(((((((((((.......)))))))))))((((((...........))))))......)))))).............. (-19.14 = -19.94 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:41 2006